diff --git a/lib/tasks/update_mt_chromosome_name.rake b/lib/tasks/update_mt_chromosome_name.rake new file mode 100644 index 0000000..7f37a61 --- /dev/null +++ b/lib/tasks/update_mt_chromosome_name.rake @@ -0,0 +1,12 @@ +# frozen_string_literal: true + +namespace :snps do + desc "change mitochondrial snp names from 'mt' to 'm'." + task :update_mt_snps => :environment do + Snp.where(:chromosome => "MT").each do |s| + s.chromosome = "M" + s.position = s.position.strip + s.save + end + end +end