mirror of
https://github.com/chenasraf/snpr.git
synced 2026-05-18 01:39:01 +00:00
46 lines
1.6 KiB
Ruby
46 lines
1.6 KiB
Ruby
# frozen_string_literal: true
|
|
require_relative '../test_helper'
|
|
|
|
class GenomeGovTest < ActiveSupport::TestCase
|
|
setup do
|
|
@snp = FactoryBot.create(:snp, name: 'rs9277554')
|
|
end
|
|
|
|
should 'create GenomeGovPapers' do
|
|
VCR.use_cassette('genome_gov_worker') do
|
|
assert_difference(-> { GenomeGovPaper.count }) do
|
|
GenomeGov.new.perform
|
|
end
|
|
end
|
|
paper = GenomeGovPaper.last
|
|
assert paper.snps.include?(@snp)
|
|
assert_equal 2.0e-50, paper.pvalue
|
|
assert_equal 'pvalue description test', paper.pvalue_description
|
|
assert_equal '[3.33-5.00] ', paper.confidence_interval
|
|
assert_equal 'http://www.ncbi.nlm.nih.gov/pubmed/23740775', paper.pubmed_link
|
|
assert_equal 'Xie G', paper.first_author
|
|
assert_equal '09/01/2013', paper.pub_date
|
|
assert_match /^Association of granulomatosis/, paper.title
|
|
assert_equal 'Arthritis Rheum', paper.journal
|
|
assert_equal "Wegener's granulomatosis", paper.trait
|
|
@snp.reload
|
|
assert_equal 2, @snp.ranking
|
|
assert @snp.genome_gov_papers.include?(paper)
|
|
end
|
|
|
|
should 'update existing GenomeGovPapers' do
|
|
paper = FactoryBot.create(:genome_gov_paper,
|
|
title: "Association of granulomatosis with polyangiitis (Wegener's) with HLA-DPB1*04 and SEMA6A gene variants: evidence from genome-wide analysis.",
|
|
pubmed_link: 'http://www.ncbi.nlm.nih.gov/pubmed/23740775')
|
|
paper.snps << @snp
|
|
|
|
VCR.use_cassette('genome_gov_worker') do
|
|
assert_no_difference(-> { GenomeGovPaper.count }) do
|
|
GenomeGov.new.perform
|
|
end
|
|
end
|
|
paper.reload
|
|
assert_equal 'Xie G', paper.first_author
|
|
end
|
|
end
|