mirror of
https://github.com/chenasraf/snpr.git
synced 2026-05-18 01:39:01 +00:00
1837 lines
44 KiB
PL/PgSQL
1837 lines
44 KiB
PL/PgSQL
--
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-- PostgreSQL database dump
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--
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-- Dumped from database version 9.5.11
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-- Dumped by pg_dump version 9.5.12
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SET statement_timeout = 0;
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SET lock_timeout = 0;
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SET client_encoding = 'UTF8';
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SET standard_conforming_strings = on;
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SET check_function_bodies = false;
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SET client_min_messages = warning;
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--
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-- Name: plpgsql; Type: EXTENSION; Schema: -; Owner: -
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--
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CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;
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--
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-- Name: EXTENSION plpgsql; Type: COMMENT; Schema: -; Owner: -
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--
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COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';
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--
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-- Name: hstore; Type: EXTENSION; Schema: -; Owner: -
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--
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CREATE EXTENSION IF NOT EXISTS hstore WITH SCHEMA public;
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--
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-- Name: EXTENSION hstore; Type: COMMENT; Schema: -; Owner: -
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--
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COMMENT ON EXTENSION hstore IS 'data type for storing sets of (key, value) pairs';
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--
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-- Name: pg_stat_statements; Type: EXTENSION; Schema: -; Owner: -
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--
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CREATE EXTENSION IF NOT EXISTS pg_stat_statements WITH SCHEMA public;
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--
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-- Name: EXTENSION pg_stat_statements; Type: COMMENT; Schema: -; Owner: -
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--
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COMMENT ON EXTENSION pg_stat_statements IS 'track execution statistics of all SQL statements executed';
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--
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-- Name: find_bad_row(text); Type: FUNCTION; Schema: public; Owner: -
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--
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CREATE FUNCTION public.find_bad_row(tablename text) RETURNS tid
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LANGUAGE plpgsql
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AS $_$
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DECLARE
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result tid;
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curs REFCURSOR;
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row1 RECORD;
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row2 RECORD;
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tabName TEXT;
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count BIGINT := 0;
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BEGIN
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SELECT reverse(split_part(reverse($1), '.', 1)) INTO tabName;
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OPEN curs FOR EXECUTE 'SELECT ctid FROM ' || tableName;
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count := 1;
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FETCH curs INTO row1;
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WHILE row1.ctid IS NOT NULL LOOP
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result = row1.ctid;
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count := count + 1;
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FETCH curs INTO row1;
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EXECUTE 'SELECT (each(hstore(' || tabName || '))).* FROM '
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|| tableName || ' WHERE ctid = $1' INTO row2
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USING row1.ctid;
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IF count % 100000 = 0 THEN
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RAISE NOTICE 'rows processed: %', count;
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END IF;
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END LOOP;
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CLOSE curs;
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RETURN row1.ctid;
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EXCEPTION
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WHEN OTHERS THEN
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RAISE NOTICE 'LAST CTID: %', result;
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RAISE NOTICE '%: %', SQLSTATE, SQLERRM;
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RETURN result;
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END
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$_$;
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--
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-- Name: upsert_user_snps(integer); Type: FUNCTION; Schema: public; Owner: -
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--
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CREATE FUNCTION public.upsert_user_snps(current_genotype_id integer) RETURNS void
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LANGUAGE plpgsql
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AS $$
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DECLARE
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temp_table_name VARCHAR := CONCAT('user_snps_temp_', current_genotype_id::varchar);
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query VARCHAR := FORMAT('SELECT snp_name, local_genotype from %s', temp_table_name);
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temp_record RECORD;
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BEGIN
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FOR temp_record IN EXECUTE(query) LOOP
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BEGIN
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INSERT INTO user_snps (snp_name, genotype_id, local_genotype)
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VALUES (temp_record.snp_name,
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current_genotype_id,
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temp_record.local_genotype);
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EXCEPTION WHEN unique_violation THEN
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UPDATE user_snps
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SET local_genotype = temp_record.local_genotype
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WHERE snp_name = temp_record.snp_name
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AND user_snps.genotype_id = current_genotype_id;
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END;
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END LOOP;
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END;
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$$;
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SET default_tablespace = '';
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SET default_with_oids = false;
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--
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-- Name: achievements; Type: TABLE; Schema: public; Owner: -
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--
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CREATE TABLE public.achievements (
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id integer NOT NULL,
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award text,
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short_name character varying(255),
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created_at timestamp without time zone,
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updated_at timestamp without time zone
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);
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--
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-- Name: achievements_id_seq; Type: SEQUENCE; Schema: public; Owner: -
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--
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CREATE SEQUENCE public.achievements_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
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NO MAXVALUE
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CACHE 1;
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--
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-- Name: achievements_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
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--
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ALTER SEQUENCE public.achievements_id_seq OWNED BY public.achievements.id;
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--
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-- Name: active_admin_comments; Type: TABLE; Schema: public; Owner: -
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--
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CREATE TABLE public.active_admin_comments (
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id integer NOT NULL,
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resource_id character varying(255) NOT NULL,
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resource_type character varying(255) NOT NULL,
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author_id integer,
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author_type character varying(255),
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body text,
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created_at timestamp without time zone NOT NULL,
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updated_at timestamp without time zone NOT NULL,
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namespace character varying(255)
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);
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--
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-- Name: active_admin_comments_id_seq; Type: SEQUENCE; Schema: public; Owner: -
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--
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CREATE SEQUENCE public.active_admin_comments_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
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NO MAXVALUE
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CACHE 1;
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--
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-- Name: active_admin_comments_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
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--
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ALTER SEQUENCE public.active_admin_comments_id_seq OWNED BY public.active_admin_comments.id;
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--
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-- Name: admin_users; Type: TABLE; Schema: public; Owner: -
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--
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CREATE TABLE public.admin_users (
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id integer NOT NULL,
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email character varying(255) DEFAULT ''::character varying NOT NULL,
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encrypted_password character varying(255) DEFAULT ''::character varying NOT NULL,
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reset_password_token character varying(255),
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reset_password_sent_at timestamp without time zone,
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remember_created_at timestamp without time zone,
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sign_in_count integer DEFAULT 0,
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current_sign_in_at timestamp without time zone,
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last_sign_in_at timestamp without time zone,
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current_sign_in_ip character varying(255),
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last_sign_in_ip character varying(255),
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created_at timestamp without time zone NOT NULL,
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updated_at timestamp without time zone NOT NULL
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);
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--
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-- Name: admin_users_id_seq; Type: SEQUENCE; Schema: public; Owner: -
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--
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CREATE SEQUENCE public.admin_users_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
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NO MAXVALUE
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CACHE 1;
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--
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-- Name: admin_users_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
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--
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ALTER SEQUENCE public.admin_users_id_seq OWNED BY public.admin_users.id;
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--
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-- Name: file_links; Type: TABLE; Schema: public; Owner: -
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--
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CREATE TABLE public.file_links (
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id integer NOT NULL,
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description text,
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url text,
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created_at timestamp without time zone,
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updated_at timestamp without time zone
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);
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--
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-- Name: file_links_id_seq; Type: SEQUENCE; Schema: public; Owner: -
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--
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CREATE SEQUENCE public.file_links_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
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NO MAXVALUE
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CACHE 1;
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--
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-- Name: file_links_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
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--
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ALTER SEQUENCE public.file_links_id_seq OWNED BY public.file_links.id;
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--
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-- Name: friendly_id_slugs; Type: TABLE; Schema: public; Owner: -
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--
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CREATE TABLE public.friendly_id_slugs (
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id integer NOT NULL,
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slug character varying(255) NOT NULL,
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sluggable_id integer NOT NULL,
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sluggable_type character varying(40),
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created_at timestamp without time zone
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);
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--
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-- Name: friendly_id_slugs_id_seq; Type: SEQUENCE; Schema: public; Owner: -
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--
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CREATE SEQUENCE public.friendly_id_slugs_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
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NO MAXVALUE
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CACHE 1;
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--
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-- Name: friendly_id_slugs_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
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--
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ALTER SEQUENCE public.friendly_id_slugs_id_seq OWNED BY public.friendly_id_slugs.id;
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--
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-- Name: genome_gov_papers; Type: TABLE; Schema: public; Owner: -
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--
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CREATE TABLE public.genome_gov_papers (
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id integer NOT NULL,
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first_author text,
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title text,
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pubmed_link text,
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pub_date text,
|
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journal text,
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|
trait text,
|
|
pvalue double precision,
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pvalue_description text,
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confidence_interval text,
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created_at timestamp without time zone,
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updated_at timestamp without time zone
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);
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--
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-- Name: genome_gov_papers_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
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--
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CREATE SEQUENCE public.genome_gov_papers_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
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NO MAXVALUE
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CACHE 1;
|
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|
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--
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-- Name: genome_gov_papers_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
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--
|
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ALTER SEQUENCE public.genome_gov_papers_id_seq OWNED BY public.genome_gov_papers.id;
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--
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-- Name: genotypes; Type: TABLE; Schema: public; Owner: -
|
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--
|
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CREATE TABLE public.genotypes (
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id integer NOT NULL,
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filetype character varying(255) DEFAULT '23andme'::character varying,
|
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user_id integer NOT NULL,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
md5sum character varying(255),
|
|
genotype_file_name character varying(255),
|
|
genotype_content_type character varying(255),
|
|
genotype_file_size integer,
|
|
genotype_updated_at timestamp without time zone
|
|
);
|
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|
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--
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-- Name: genotypes_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
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--
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CREATE SEQUENCE public.genotypes_id_seq
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START WITH 1
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INCREMENT BY 1
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NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
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--
|
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-- Name: genotypes_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
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--
|
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ALTER SEQUENCE public.genotypes_id_seq OWNED BY public.genotypes.id;
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|
|
|
|
--
|
|
-- Name: homepages; Type: TABLE; Schema: public; Owner: -
|
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--
|
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|
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CREATE TABLE public.homepages (
|
|
id integer NOT NULL,
|
|
url text,
|
|
description text,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
user_id integer
|
|
);
|
|
|
|
|
|
--
|
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-- Name: homepages_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
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|
|
CREATE SEQUENCE public.homepages_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
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NO MINVALUE
|
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NO MAXVALUE
|
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CACHE 1;
|
|
|
|
|
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--
|
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-- Name: homepages_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
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--
|
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ALTER SEQUENCE public.homepages_id_seq OWNED BY public.homepages.id;
|
|
|
|
|
|
--
|
|
-- Name: mendeley_papers; Type: TABLE; Schema: public; Owner: -
|
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--
|
|
|
|
CREATE TABLE public.mendeley_papers (
|
|
id integer NOT NULL,
|
|
first_author text,
|
|
title text,
|
|
mendeley_url text,
|
|
doi text,
|
|
pub_year integer,
|
|
uuid character varying(255),
|
|
open_access boolean,
|
|
reader integer,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: mendeley_papers_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.mendeley_papers_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: mendeley_papers_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.mendeley_papers_id_seq OWNED BY public.mendeley_papers.id;
|
|
|
|
|
|
--
|
|
-- Name: messages; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.messages (
|
|
id integer NOT NULL,
|
|
subject text,
|
|
user_id integer,
|
|
body text,
|
|
sent boolean,
|
|
user_has_seen boolean,
|
|
from_id integer,
|
|
to_id integer,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: messages_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.messages_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: messages_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.messages_id_seq OWNED BY public.messages.id;
|
|
|
|
|
|
--
|
|
-- Name: open_humans_profiles; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.open_humans_profiles (
|
|
id integer NOT NULL,
|
|
open_humans_user_id character varying,
|
|
project_member_id character varying,
|
|
user_id integer,
|
|
access_token character varying,
|
|
refresh_token character varying,
|
|
expires_in timestamp without time zone,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: open_humans_profiles_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.open_humans_profiles_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: open_humans_profiles_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.open_humans_profiles_id_seq OWNED BY public.open_humans_profiles.id;
|
|
|
|
|
|
--
|
|
-- Name: pgp_annotations; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.pgp_annotations (
|
|
id integer NOT NULL,
|
|
gene text,
|
|
qualified_impact text,
|
|
inheritance text,
|
|
summary text,
|
|
trait text,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
snp_id integer
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: pgp_annotations_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.pgp_annotations_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: pgp_annotations_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.pgp_annotations_id_seq OWNED BY public.pgp_annotations.id;
|
|
|
|
|
|
--
|
|
-- Name: phenotype_comments; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.phenotype_comments (
|
|
id integer NOT NULL,
|
|
comment_text text,
|
|
subject text,
|
|
user_id integer,
|
|
phenotype_id integer,
|
|
reply_to_id integer,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: phenotype_comments_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.phenotype_comments_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: phenotype_comments_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.phenotype_comments_id_seq OWNED BY public.phenotype_comments.id;
|
|
|
|
|
|
--
|
|
-- Name: phenotype_sets; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.phenotype_sets (
|
|
id integer NOT NULL,
|
|
user_id integer,
|
|
title character varying(255),
|
|
description text,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: phenotype_sets_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.phenotype_sets_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: phenotype_sets_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.phenotype_sets_id_seq OWNED BY public.phenotype_sets.id;
|
|
|
|
|
|
--
|
|
-- Name: phenotype_sets_phenotypes; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.phenotype_sets_phenotypes (
|
|
phenotype_set_id integer,
|
|
phenotype_id integer
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: phenotypes; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.phenotypes (
|
|
id integer NOT NULL,
|
|
characteristic character varying(255),
|
|
known_phenotypes text,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
description text
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: phenotypes_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.phenotypes_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: phenotypes_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.phenotypes_id_seq OWNED BY public.phenotypes.id;
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotype_comments; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.picture_phenotype_comments (
|
|
id integer NOT NULL,
|
|
comment_text text,
|
|
subject text,
|
|
user_id integer,
|
|
picture_phenotype_id integer,
|
|
reply_to_id integer,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotype_comments_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.picture_phenotype_comments_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotype_comments_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.picture_phenotype_comments_id_seq OWNED BY public.picture_phenotype_comments.id;
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotypes; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.picture_phenotypes (
|
|
id integer NOT NULL,
|
|
characteristic character varying(255),
|
|
description text,
|
|
number_of_users integer DEFAULT 0,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotypes_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.picture_phenotypes_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotypes_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.picture_phenotypes_id_seq OWNED BY public.picture_phenotypes.id;
|
|
|
|
|
|
--
|
|
-- Name: plos_papers; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.plos_papers (
|
|
id integer NOT NULL,
|
|
first_author text,
|
|
title text,
|
|
doi text,
|
|
pub_date timestamp without time zone,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
reader integer
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: plos_papers_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.plos_papers_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: plos_papers_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.plos_papers_id_seq OWNED BY public.plos_papers.id;
|
|
|
|
|
|
--
|
|
-- Name: schema_migrations; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.schema_migrations (
|
|
version character varying(255) NOT NULL
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: snp_comments; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.snp_comments (
|
|
id integer NOT NULL,
|
|
comment_text text,
|
|
subject text,
|
|
user_id integer,
|
|
snp_id integer,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
reply_to_id integer
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: snp_comments_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.snp_comments_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: snp_comments_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.snp_comments_id_seq OWNED BY public.snp_comments.id;
|
|
|
|
|
|
--
|
|
-- Name: snp_references; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.snp_references (
|
|
snp_id integer,
|
|
paper_id integer,
|
|
paper_type character varying(255)
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: snp_references_backup; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.snp_references_backup (
|
|
snp_id integer NOT NULL,
|
|
paper_id integer NOT NULL,
|
|
paper_type character varying(255) NOT NULL
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: snpedia_papers; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.snpedia_papers (
|
|
id integer NOT NULL,
|
|
url character varying(255),
|
|
summary text,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
revision integer DEFAULT 0
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: snpedia_papers_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.snpedia_papers_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: snpedia_papers_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.snpedia_papers_id_seq OWNED BY public.snpedia_papers.id;
|
|
|
|
|
|
--
|
|
-- Name: snps; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.snps (
|
|
id integer NOT NULL,
|
|
name character varying(255),
|
|
"position" character varying(255),
|
|
chromosome character varying(255),
|
|
genotype_frequency character varying(255) DEFAULT '--- {}
|
|
'::character varying,
|
|
allele_frequency character varying(255) DEFAULT '---
|
|
A: 0
|
|
T: 0
|
|
G: 0
|
|
C: 0
|
|
'::character varying,
|
|
ranking integer DEFAULT 0,
|
|
number_of_users integer DEFAULT 0,
|
|
mendeley_updated timestamp without time zone DEFAULT '2011-08-24 03:44:32.459467'::timestamp without time zone,
|
|
plos_updated timestamp without time zone DEFAULT '2011-08-24 03:44:32.459582'::timestamp without time zone,
|
|
snpedia_updated timestamp without time zone DEFAULT '2011-08-24 03:44:32.459627'::timestamp without time zone,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
user_snps_count integer
|
|
)
|
|
WITH (autovacuum_enabled='false', toast.autovacuum_enabled='false');
|
|
|
|
|
|
--
|
|
-- Name: snps_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.snps_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: snps_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.snps_id_seq OWNED BY public.snps.id;
|
|
|
|
|
|
--
|
|
-- Name: user_achievements; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.user_achievements (
|
|
id integer NOT NULL,
|
|
user_id integer,
|
|
achievement_id integer,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: user_achievements_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.user_achievements_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: user_achievements_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.user_achievements_id_seq OWNED BY public.user_achievements.id;
|
|
|
|
|
|
--
|
|
-- Name: user_phenotypes; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.user_phenotypes (
|
|
id integer NOT NULL,
|
|
user_id integer,
|
|
phenotype_id integer,
|
|
variation character varying(255),
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: user_phenotypes_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.user_phenotypes_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: user_phenotypes_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.user_phenotypes_id_seq OWNED BY public.user_phenotypes.id;
|
|
|
|
|
|
--
|
|
-- Name: user_picture_phenotypes; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.user_picture_phenotypes (
|
|
id integer NOT NULL,
|
|
user_id integer,
|
|
picture_phenotype_id integer,
|
|
variation character varying(255),
|
|
phenotype_picture_file_name character varying(255),
|
|
phenotype_picture_content_type character varying(255),
|
|
phenotype_picture_file_size integer,
|
|
phenotype_picture_updated_at timestamp without time zone,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: user_picture_phenotypes_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.user_picture_phenotypes_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: user_picture_phenotypes_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.user_picture_phenotypes_id_seq OWNED BY public.user_picture_phenotypes.id;
|
|
|
|
|
|
--
|
|
-- Name: user_snps; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.user_snps (
|
|
snp_name character varying(32) NOT NULL,
|
|
genotype_id integer NOT NULL,
|
|
local_genotype bpchar
|
|
)
|
|
WITH (autovacuum_enabled='false', toast.autovacuum_enabled='false');
|
|
|
|
|
|
--
|
|
-- Name: users; Type: TABLE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE TABLE public.users (
|
|
id integer NOT NULL,
|
|
name character varying(255),
|
|
email character varying(255),
|
|
password_salt character varying(255),
|
|
crypted_password character varying(255),
|
|
persistence_token character varying(255),
|
|
perishable_token character varying(255),
|
|
has_sequence boolean DEFAULT false,
|
|
sequence_link character varying(255),
|
|
description text,
|
|
finished_snp_parsing boolean DEFAULT false,
|
|
phenotype_creation_counter integer DEFAULT 0,
|
|
created_at timestamp without time zone,
|
|
updated_at timestamp without time zone,
|
|
avatar_file_name character varying(255),
|
|
avatar_content_type character varying(255),
|
|
avatar_file_size integer,
|
|
avatar_updated_at timestamp without time zone,
|
|
help_one boolean DEFAULT false,
|
|
help_two boolean DEFAULT false,
|
|
help_three boolean DEFAULT false,
|
|
sex character varying(255) DEFAULT 'rather not say'::character varying,
|
|
yearofbirth character varying(255) DEFAULT 'rather not say'::character varying,
|
|
message_on_message boolean DEFAULT true,
|
|
message_on_snp_comment_reply boolean DEFAULT true,
|
|
message_on_phenotype_comment_reply boolean DEFAULT true,
|
|
message_on_newsletter boolean DEFAULT true,
|
|
message_on_new_phenotype boolean DEFAULT false,
|
|
admin boolean DEFAULT false NOT NULL
|
|
);
|
|
|
|
|
|
--
|
|
-- Name: users_id_seq; Type: SEQUENCE; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE SEQUENCE public.users_id_seq
|
|
START WITH 1
|
|
INCREMENT BY 1
|
|
NO MINVALUE
|
|
NO MAXVALUE
|
|
CACHE 1;
|
|
|
|
|
|
--
|
|
-- Name: users_id_seq; Type: SEQUENCE OWNED BY; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER SEQUENCE public.users_id_seq OWNED BY public.users.id;
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.achievements ALTER COLUMN id SET DEFAULT nextval('public.achievements_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.active_admin_comments ALTER COLUMN id SET DEFAULT nextval('public.active_admin_comments_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.admin_users ALTER COLUMN id SET DEFAULT nextval('public.admin_users_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.file_links ALTER COLUMN id SET DEFAULT nextval('public.file_links_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.friendly_id_slugs ALTER COLUMN id SET DEFAULT nextval('public.friendly_id_slugs_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.genome_gov_papers ALTER COLUMN id SET DEFAULT nextval('public.genome_gov_papers_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.genotypes ALTER COLUMN id SET DEFAULT nextval('public.genotypes_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.homepages ALTER COLUMN id SET DEFAULT nextval('public.homepages_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.mendeley_papers ALTER COLUMN id SET DEFAULT nextval('public.mendeley_papers_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.messages ALTER COLUMN id SET DEFAULT nextval('public.messages_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.open_humans_profiles ALTER COLUMN id SET DEFAULT nextval('public.open_humans_profiles_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.pgp_annotations ALTER COLUMN id SET DEFAULT nextval('public.pgp_annotations_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.phenotype_comments ALTER COLUMN id SET DEFAULT nextval('public.phenotype_comments_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.phenotype_sets ALTER COLUMN id SET DEFAULT nextval('public.phenotype_sets_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.phenotypes ALTER COLUMN id SET DEFAULT nextval('public.phenotypes_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.picture_phenotype_comments ALTER COLUMN id SET DEFAULT nextval('public.picture_phenotype_comments_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.picture_phenotypes ALTER COLUMN id SET DEFAULT nextval('public.picture_phenotypes_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.plos_papers ALTER COLUMN id SET DEFAULT nextval('public.plos_papers_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.snp_comments ALTER COLUMN id SET DEFAULT nextval('public.snp_comments_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.snpedia_papers ALTER COLUMN id SET DEFAULT nextval('public.snpedia_papers_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.snps ALTER COLUMN id SET DEFAULT nextval('public.snps_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_achievements ALTER COLUMN id SET DEFAULT nextval('public.user_achievements_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_phenotypes ALTER COLUMN id SET DEFAULT nextval('public.user_phenotypes_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_picture_phenotypes ALTER COLUMN id SET DEFAULT nextval('public.user_picture_phenotypes_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: id; Type: DEFAULT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.users ALTER COLUMN id SET DEFAULT nextval('public.users_id_seq'::regclass);
|
|
|
|
|
|
--
|
|
-- Name: achievements_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.achievements
|
|
ADD CONSTRAINT achievements_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: admin_notes_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.active_admin_comments
|
|
ADD CONSTRAINT admin_notes_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: admin_users_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.admin_users
|
|
ADD CONSTRAINT admin_users_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: file_links_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.file_links
|
|
ADD CONSTRAINT file_links_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: friendly_id_slugs_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.friendly_id_slugs
|
|
ADD CONSTRAINT friendly_id_slugs_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: genome_gov_papers_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.genome_gov_papers
|
|
ADD CONSTRAINT genome_gov_papers_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: genotypes_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.genotypes
|
|
ADD CONSTRAINT genotypes_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: homepages_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.homepages
|
|
ADD CONSTRAINT homepages_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: mendeley_papers_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.mendeley_papers
|
|
ADD CONSTRAINT mendeley_papers_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: messages_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.messages
|
|
ADD CONSTRAINT messages_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: open_humans_profiles_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.open_humans_profiles
|
|
ADD CONSTRAINT open_humans_profiles_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: pgp_annotations_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.pgp_annotations
|
|
ADD CONSTRAINT pgp_annotations_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: phenotype_comments_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.phenotype_comments
|
|
ADD CONSTRAINT phenotype_comments_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: phenotype_sets_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.phenotype_sets
|
|
ADD CONSTRAINT phenotype_sets_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: phenotypes_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.phenotypes
|
|
ADD CONSTRAINT phenotypes_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotype_comments_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.picture_phenotype_comments
|
|
ADD CONSTRAINT picture_phenotype_comments_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotypes_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.picture_phenotypes
|
|
ADD CONSTRAINT picture_phenotypes_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: plos_papers_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.plos_papers
|
|
ADD CONSTRAINT plos_papers_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: snp_comments_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.snp_comments
|
|
ADD CONSTRAINT snp_comments_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: snpedia_papers_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.snpedia_papers
|
|
ADD CONSTRAINT snpedia_papers_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: snps_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.snps
|
|
ADD CONSTRAINT snps_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: user_achievements_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_achievements
|
|
ADD CONSTRAINT user_achievements_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: user_phenotypes_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_phenotypes
|
|
ADD CONSTRAINT user_phenotypes_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: user_picture_phenotypes_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_picture_phenotypes
|
|
ADD CONSTRAINT user_picture_phenotypes_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: user_snps_new_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_snps
|
|
ADD CONSTRAINT user_snps_new_pkey PRIMARY KEY (genotype_id, snp_name);
|
|
|
|
|
|
--
|
|
-- Name: users_pkey; Type: CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.users
|
|
ADD CONSTRAINT users_pkey PRIMARY KEY (id);
|
|
|
|
|
|
--
|
|
-- Name: idx_user_snps_snp_name; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX idx_user_snps_snp_name ON public.user_snps USING btree (snp_name);
|
|
|
|
|
|
--
|
|
-- Name: index_active_admin_comments_on_author_type_and_author_id; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_active_admin_comments_on_author_type_and_author_id ON public.active_admin_comments USING btree (author_type, author_id);
|
|
|
|
|
|
--
|
|
-- Name: index_active_admin_comments_on_namespace; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_active_admin_comments_on_namespace ON public.active_admin_comments USING btree (namespace);
|
|
|
|
|
|
--
|
|
-- Name: index_admin_notes_on_resource_type_and_resource_id; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_admin_notes_on_resource_type_and_resource_id ON public.active_admin_comments USING btree (resource_type, resource_id);
|
|
|
|
|
|
--
|
|
-- Name: index_admin_users_on_email; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE UNIQUE INDEX index_admin_users_on_email ON public.admin_users USING btree (email);
|
|
|
|
|
|
--
|
|
-- Name: index_admin_users_on_reset_password_token; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE UNIQUE INDEX index_admin_users_on_reset_password_token ON public.admin_users USING btree (reset_password_token);
|
|
|
|
|
|
--
|
|
-- Name: index_friendly_id_slugs_on_slug_and_sluggable_type; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE UNIQUE INDEX index_friendly_id_slugs_on_slug_and_sluggable_type ON public.friendly_id_slugs USING btree (slug, sluggable_type);
|
|
|
|
|
|
--
|
|
-- Name: index_friendly_id_slugs_on_sluggable_id; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_friendly_id_slugs_on_sluggable_id ON public.friendly_id_slugs USING btree (sluggable_id);
|
|
|
|
|
|
--
|
|
-- Name: index_friendly_id_slugs_on_sluggable_type; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_friendly_id_slugs_on_sluggable_type ON public.friendly_id_slugs USING btree (sluggable_type);
|
|
|
|
|
|
--
|
|
-- Name: index_snp_references_backup_on_paper_id_and_paper_type; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_snp_references_backup_on_paper_id_and_paper_type ON public.snp_references_backup USING btree (paper_id, paper_type);
|
|
|
|
|
|
--
|
|
-- Name: index_snp_references_backup_on_snp_id; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_snp_references_backup_on_snp_id ON public.snp_references_backup USING btree (snp_id);
|
|
|
|
|
|
--
|
|
-- Name: index_snp_references_on_paper_id_and_paper_type; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_snp_references_on_paper_id_and_paper_type ON public.snp_references USING btree (paper_id, paper_type);
|
|
|
|
|
|
--
|
|
-- Name: index_snp_references_on_snp_id; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_snp_references_on_snp_id ON public.snp_references USING btree (snp_id);
|
|
|
|
|
|
--
|
|
-- Name: index_snps_chromosome_position; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_snps_chromosome_position ON public.snps USING btree (chromosome, "position");
|
|
|
|
|
|
--
|
|
-- Name: index_snps_on_id; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE UNIQUE INDEX index_snps_on_id ON public.snps USING btree (id);
|
|
|
|
|
|
--
|
|
-- Name: index_snps_on_name; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE UNIQUE INDEX index_snps_on_name ON public.snps USING btree (name);
|
|
|
|
|
|
--
|
|
-- Name: index_snps_ranking; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX index_snps_ranking ON public.snps USING btree (ranking);
|
|
|
|
|
|
--
|
|
-- Name: index_users_on_email; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE UNIQUE INDEX index_users_on_email ON public.users USING btree (email);
|
|
|
|
|
|
--
|
|
-- Name: index_users_on_persistence_token; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE UNIQUE INDEX index_users_on_persistence_token ON public.users USING btree (persistence_token);
|
|
|
|
|
|
--
|
|
-- Name: snps_position_idx; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX snps_position_idx ON public.snps USING btree ("position");
|
|
|
|
|
|
--
|
|
-- Name: user_phenotypes_phenotype_id_idx; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX user_phenotypes_phenotype_id_idx ON public.user_phenotypes USING btree (phenotype_id);
|
|
|
|
|
|
--
|
|
-- Name: user_phenotypes_user_id_idx; Type: INDEX; Schema: public; Owner: -
|
|
--
|
|
|
|
CREATE INDEX user_phenotypes_user_id_idx ON public.user_phenotypes USING btree (user_id);
|
|
|
|
|
|
--
|
|
-- Name: genotypes_user_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.genotypes
|
|
ADD CONSTRAINT genotypes_user_id_fk FOREIGN KEY (user_id) REFERENCES public.users(id);
|
|
|
|
|
|
--
|
|
-- Name: homepages_user_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.homepages
|
|
ADD CONSTRAINT homepages_user_id_fk FOREIGN KEY (user_id) REFERENCES public.users(id);
|
|
|
|
|
|
--
|
|
-- Name: phenotype_comments_user_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.phenotype_comments
|
|
ADD CONSTRAINT phenotype_comments_user_id_fk FOREIGN KEY (user_id) REFERENCES public.users(id);
|
|
|
|
|
|
--
|
|
-- Name: picture_phenotype_comments_user_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.picture_phenotype_comments
|
|
ADD CONSTRAINT picture_phenotype_comments_user_id_fk FOREIGN KEY (user_id) REFERENCES public.users(id);
|
|
|
|
|
|
--
|
|
-- Name: user_achievements_user_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_achievements
|
|
ADD CONSTRAINT user_achievements_user_id_fk FOREIGN KEY (user_id) REFERENCES public.users(id);
|
|
|
|
|
|
--
|
|
-- Name: user_phenotypes_user_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_phenotypes
|
|
ADD CONSTRAINT user_phenotypes_user_id_fk FOREIGN KEY (user_id) REFERENCES public.users(id);
|
|
|
|
|
|
--
|
|
-- Name: user_picture_phenotypes_user_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_picture_phenotypes
|
|
ADD CONSTRAINT user_picture_phenotypes_user_id_fk FOREIGN KEY (user_id) REFERENCES public.users(id);
|
|
|
|
|
|
--
|
|
-- Name: user_snps_genotype_id_fk; Type: FK CONSTRAINT; Schema: public; Owner: -
|
|
--
|
|
|
|
ALTER TABLE ONLY public.user_snps
|
|
ADD CONSTRAINT user_snps_genotype_id_fk FOREIGN KEY (genotype_id) REFERENCES public.genotypes(id);
|
|
|
|
|
|
--
|
|
-- PostgreSQL database dump complete
|
|
--
|
|
|
|
SET search_path TO "$user", public;
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110608000645');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110615045458');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110615173154');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110616192820');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110617144145');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110819233120');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110820195410');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110821112909');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110822071221');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110822110806');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110823032055');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110824164934');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110830134100');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110912190409');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110914100443');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110914100516');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110914151105');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110917193600');
|
|
|
|
INSERT INTO schema_migrations (version) VALUES ('20110926092220');
|
|
|
|
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INSERT INTO schema_migrations (version) VALUES ('20120916211800');
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INSERT INTO schema_migrations (version) VALUES ('20120916212700');
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INSERT INTO schema_migrations (version) VALUES ('20121006230458');
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INSERT INTO schema_migrations (version) VALUES ('20151028130755');
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INSERT INTO schema_migrations (version) VALUES ('20151119070640');
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INSERT INTO schema_migrations (version) VALUES ('20161226175703');
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INSERT INTO schema_migrations (version) VALUES ('20171113104813');
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INSERT INTO schema_migrations (version) VALUES ('20180118100003');
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