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906eef5403
* Passwords now need to be 8 characters long (new default in authlogic). * To login to the Sidekiq web interface, log in to opensnp.org, if you have the `admin` flag set, you will find it at the usual place. * I finally found out why Rubocop didn't complain about the frozen string literal pragma missing and added all of them. * Rubocop complained about keyword arguments, which is only relevant for Rails 5, so I disabled the cop. * I removed the `inherit_from: .rubocop_todo.yml` from `.rubocop.yml`, so Hound does complain about **all** the issues. I also added a few tasks for running Rubocop.
42 lines
1.3 KiB
Ruby
42 lines
1.3 KiB
Ruby
# frozen_string_literal: true
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class Frequency
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include Sidekiq::Worker
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sidekiq_options queue: :frequency, retry: 5, unique: true
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def perform(snp_id)
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Snp.reset_counters(snp_id, :user_snps)
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s = Snp.find(snp_id)
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s.allele_frequency ||= { "A" => 0, "T" => 0, "G" => 0, "C" => 0}
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s.genotype_frequency ||= {}
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s.user_snps.find_each do |us|
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if s.allele_frequency.has_key?(us.local_genotype[0].chr)
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s.allele_frequency[us.local_genotype[0].chr] += 1
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else
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s.allele_frequency[us.local_genotype[0].chr] = 1
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end
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if us.local_genotype.length > 1
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if s.allele_frequency.has_key?(us.local_genotype[1].chr)
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s.allele_frequency[us.local_genotype[1].chr] += 1
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else
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s.allele_frequency[us.local_genotype[1].chr] = 1
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end
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end
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if s.genotype_frequency.has_key?(us.local_genotype.rstrip)
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s.genotype_frequency[us.local_genotype.rstrip] += 1
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elsif us.local_genotype.length > 1
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if s.genotype_frequency.has_key?(us.local_genotype[1].chr+us.local_genotype[0].chr)
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s.genotype_frequency[us.local_genotype[1].chr+us.local_genotype[0].chr] += 1
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else
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s.genotype_frequency[us.local_genotype.rstrip] = 1
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end
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else
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s.genotype_frequency[us.local_genotype.rstrip] = 1
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end
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end
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s.save
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end
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end
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