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fix grammar in views for issue 239

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SXibolet
2016-06-02 16:18:20 -04:00
parent 5e22071918
commit 49f80b1cf1
8 changed files with 43 additions and 43 deletions
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.gitignore vendored
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@@ -32,3 +32,4 @@ vendor/bundle
vendor/cache
logfile
.env
.DS_Store

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app/views/index/index.html.erb
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@@ -1,7 +1,7 @@
<div class="leftside">
<h1>Welcome to <em>openSNP</em></h1>
<p><%=image_tag "microarray.png",:style => "float:left;margin: 10px"%></p>
<p><h7><em>openSNP</em> allows customers of direct-to-customer genetic tests to publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and help scientists find new associations.</h7></p> <center><a href="/signup" class="btn btn-primary btn-large">Sign Up!</a> <a href="/data/zip/opensnp_datadump.current.zip" class="btn btn-primary btn-large">Download the data!</a></center><br/><br/>
<p><h7><em>openSNP</em> lets customers of direct-to-customer genetic tests publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and helps scientists find new associations.</h7></p> <center><a href="/signup" class="btn btn-primary btn-large">Sign Up!</a> <a href="/data/zip/opensnp_datadump.current.zip" class="btn btn-primary btn-large">Download the data!</a></center><br/><br/>
<div id="tab-container">
<ul class="nav nav-tabs">
<li><a href="#dtcustomers">For Genotyping Users</a></li>
@@ -19,7 +19,7 @@
<h4>Share Your Phenotypes & Traits</h4>
<%=image_tag("phenotypes.png")%><br/>
Phenotypes are the observable characteristics of your body, such as height, eye color or preference for coffee.
Share your phenotype with other <em>openSNP</em> users and find others with similar characteristics and traits.<br/>Your data may help scientists discover new genetic associations!
Share your phenotype with other <em>openSNP</em> users, and find others with similar characteristics and traits.<br/>Your data may help scientists discover new genetic associations!
</div>
<div class="well span3">
<h4>Share your stories on variations & phenotypes</h4>
@@ -29,7 +29,7 @@
<div class="well span3">
<h4>Find literature on genetic variation</h4>
<%=image_tag("literature.png")%></br>
<em>openSNP</em> gets the latest open access journal articles on genetic variations from the <em><%=link_to "Public Library of Science","http://www.plos.org/"%></em>. Popular articles are indexed via the social reference manager <em><%=link_to "Mendeley","http://www.mendeley.com/"%></em> and summaries are provided by <em><%=link_to "SNPedia","http://snpedia.com"%></em>.
<em>openSNP</em> gets the latest open access journal articles on genetic variations from the <em><%=link_to "Public Library of Science","http://www.plos.org/"%></em>. Popular articles are indexed via the social reference manager <em><%=link_to "Mendeley","http://www.mendeley.com/"%></em>, and summaries are provided by <em><%=link_to "SNPedia","http://snpedia.com"%></em>.
</div>
</div>
</div>
@@ -40,17 +40,17 @@
<div class="well span4">
<h4>Search for phenotypes</h4>
<%=image_tag("phenotypesearch.png")%><br/>
Many diseases and traits are suspected to have genetical components. Genome Wide Association Studies are a simple tool find genetic markers. Easily find people with the variation you are interested in via openSNP.<br/><br/>The variation you are looking for is not entered yet? Just add it to <em>openSNP</em>
Many diseases and traits are suspected to have genetical components. Genome Wide Association Studies are a simple tool for finding genetic markers. Easily find people with the variation you are interested in via <em>openSNP</em>.<br/><br/>Is the variation for which you're looking not entered yet? Just add it to <em>openSNP</em>.
</div>
<div class="well span4">
<h4>Easily download datasets</h4>
<%=image_tag("filedownload.png")%><br/>
The mass download-function of <em>openSNP</em> allows you to easily download the full genotyping raw-data in the file formats that are provided by <em>23andMe</em>, <em>deCODEme</em> and <em>FamilyTreeDNA</em>.<br/><br/>As the files can be grouped by their variations for specific phenotypes it is easy to get datasets that are already usable for association studies.
The mass-download function of <em>openSNP</em> allows you to easily download full genotyping raw-data in the file formats that are provided by <em>23andMe</em>, <em>deCODEme</em> and <em>FamilyTreeDNA</em>.<br/><br/>As the files can be grouped by their variations for specific phenotypes, it's easy to get datasets that are already usable for association studies.
</div>
<div class="well span4">
<h4>Get notified about new data</h4>
<%=image_tag("rss.png")%><br/>
<em>openSNP</em> delivers a RSS-feed for each phenotype. So you can easily get all new datasets that get available for the phenotypes of your interest, without the need to check for new entries by hand.<br/><br/>For all data junkies that need more data: There is also a feed that carries all new datasets.
<em>openSNP</em> delivers an RSS-feed for each phenotype. So you can easily get all new datasets that get available for the phenotypes of your interest, without the need to check for new entries by hand.<br/><br/>For data-junkies that need more data: there's also a feed that carries all new datasets.
</div>
</div>
</div>

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app/views/layouts/_footer.html.erb
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@@ -2,7 +2,7 @@
<div class="container">
Contact openSNP: <a href="http://opensnp.wordpress.com" target="_blank">Blog</a> | <a href="http://www.twitter.com/openSNPorg" target="_blank">Twitter</a> | <a href="mailto:info@opensnp.org">Mail</a> | <a href="https://www.iubenda.com/privacy-policy/641811" class="iubenda-nostyle " id="iubenda-embed" title="Privacy Policy">Privacy Policy</a> | <%= link_to "openSNP in the press", "/press"%>
<br/><br/>
Our hosting is made possible thanks to the kind support of <a href="https://www.sbgenomics.com/">Seven Bridges</a> – and its biomedical data analysis platform – and <a href="https://patreon.com/openSNP">our patrons on Patreon.</a> Please consider <a href="https://www.patreon.com/openSNP?ty=h">supporting us as well</a>, if our service is valuable to you!
Our hosting is made possible thanks to the kind support of <a href="https://www.sbgenomics.com/">Seven Bridges</a> – and its biomedical data analysis platform – and <a href="https://patreon.com/openSNP">our patrons on Patreon.</a> Please consider <a href="https://www.patreon.com/openSNP?ty=h">supporting us as well</a> if our service is valuable to you!
<script type="text/javascript">(function (w,d) {var loader = function () {var s = d.createElement("script"), tag = d.getElementsByTagName("script")[0]; s.src = "https://cdn.iubenda.com/iubenda.js"; tag.parentNode.insertBefore(s,tag);}; w.addEventListener ? w.addEventListener("load", loader, false) : w.attachEvent("onload", loader);})(window, document);</script></br></br>
The openSNP project is licensed under the <a href="https://github.com/openSNP/snpr/blob/master/LICENSE.md" target="_blank">MIT License</a>, the code <a href="https://github.com/openSNP/snpr">is at GitHub</a>. The data is donated into the public domain using <a href="http://creativecommons.org/publicdomain/zero/1.0/" target="_blank">CC0 1.0</a>. The hand drawn icons were created by <a href="http://oneseventyseven.com/" target="_blank">one seventy seven</a> and are licensed under <a href="http://creativecommons.org/licenses/by/3.0/" target="_blank">CC BY 3.0</a>, the CSS of openSNP is provided by <a href="http://twitter.github.com/bootstrap/">Bootstrap, from Twitter</a> and is licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License v2.0</a>. Tiny white person in the navigational-bar from <a href="http://glyphicons.com/">glyphicons</a>.
The openSNP project is licensed under the <a href="https://github.com/openSNP/snpr/blob/master/LICENSE.md" target="_blank">MIT License</a>, and the code <a href="https://github.com/openSNP/snpr">is on GitHub</a>. The data is donated into the public domain using <a href="http://creativecommons.org/publicdomain/zero/1.0/" target="_blank">CC0 1.0</a>. The hand-drawn icons were created by <a href="http://oneseventyseven.com/" target="_blank">one seventy seven</a> and are licensed under <a href="http://creativecommons.org/licenses/by/3.0/" target="_blank">CC BY 3.0</a>. The CSS of openSNP is provided by <a href="http://twitter.github.com/bootstrap/">Twitter Bootstrap</a> and is licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License v2.0</a>. The tiny white person in the navigation-bar is from <a href="http://glyphicons.com/">glyphicons</a>.
</div>

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@@ -42,7 +42,7 @@
</div>
<h5> 2016-03-17: We're joining the Google Summer of Code</h5>
<p>
Each year Google is running its Google Summer of Code (GSoC), which is aimed at students to get started with open source work. Students participating in it will get paid by Google to work on a specific open source project for 3 months.
Each year, Google runs its Google Summer of Code (GSoC) program, which is aimed at students interested in open-source work. Participating students will get paid by Google to work on a specific open-source project for 3 months.
</p>
<p>
The Open Bioinformatics Foundation (OBF) has put up a few of our project ideas, so if you're a currently enrolled student and you want to <a href="http://obf.github.io/GSoC/ideas/#opensnp">work on improving openSNP while earning money, our proposed projects are listed online</a>.
@@ -54,11 +54,11 @@
Some more general information can <a href="http://obf.github.io/GSoC/">be found on the OBF's GSoC pages</a>.
</p>
<p>
The application deadline for this year's Google Summer of Code (GSoC) is approaching fast (March 25th). So If you're interested in participating in this program, just reply to this newsletter or <a href="https://gitter.im/openSNP/snpr">join us on gitter</a>.
The application deadline for this year's Google Summer of Code (GSoC) is approaching quickly (March 25th). So if you're interested in participating in this program, just reply to this newsletter or <a href="https://gitter.im/openSNP/snpr">join us on gitter</a>.
</p>
<h5> 2016-02-05: Adopting a Code of Conduct</h5>
<p>
We strive to keep openSNP a friendly community, amongst our developers as well as the community on openSNP.org. So far this hasn't been a problem and we don't expect it to become one. Thanks for being model open science citizens to everyone in the openSNP universe. In order to show our commitment to diversity, inclusion and creating safe spaces <a href="https://github.com/gedankenstuecke/snpr/blob/master/CODE_OF_CONDUCT.md">we are adopting a Code of Conduct</a>, inspired by the team of <a href="http://www.slidewinder.io">Slidewinder.io</a>.
We strive to keep openSNP a friendly community, amongst our developers as well as the community on openSNP.org. So far this hasn't been a problem, and we don't expect it to become one. Thanks for being model open science citizens to everyone in the openSNP universe. In order to show our commitment to diversity, inclusion and creating safe spaces <a href="https://github.com/gedankenstuecke/snpr/blob/master/CODE_OF_CONDUCT.md">we are adopting a Code of Conduct</a>, inspired by the team of <a href="http://www.slidewinder.io">Slidewinder.io</a>.
</p>
<h5> 2015-09-23: openSNP is now on Patreon </h5>
<p>
@@ -71,12 +71,12 @@
<h5>3 years of openSNP and 1000 genotypings!</h5>
<p>openSNP has now been running for 3 years and we recently received the 1000th genotyping. Thanks to all users and helpers who made this possible! <a href='http://opensnp.wordpress.com/2014/05/31/1000-genotypings-and-3-years-of-opensnp/'>More on the blog</a>.<p>
<h5>Support the Open Access petition of access2research</h5>
<p>We support the <a href="http://wh.gov/6TH">access2research petition for Open Access</a> directed to the Obama administration. The petition wants to make Open Access publication of tax-funded publications mandatory. In total, 25,000 signatures are needed to have the petition officially reviewed by the White House. Non-US-citizens may sign the petition, too, so <a href="http://wh.gov/6TH">it would be great if you sign it</a>, too! For more information, please <a href="http://opensnp.wordpress.com/2012/05/23/a-petition-on-open-access/">read our blogpost on the petition</a>.
<p>We support the <a href="http://wh.gov/6TH">access2research petition for Open Access</a> directed to the Obama administration. The petition seeks to make Open Access publication of tax-funded publications mandatory. In total, 25,000 signatures are needed to have the petition officially reviewed by the White House. Non-US-citizens may sign the petition, too, so <a href="http://wh.gov/6TH">it would be great if you sign it</a>, too! For more information, please <a href="http://opensnp.wordpress.com/2012/05/23/a-petition-on-open-access/">read our blogpost on the petition</a>.
<div align="center"><%= image_tag("a2r.png") %></div>
</p>
<h5>API: JSON methods</h5>
<p>
The promised support for the <em>Distributed Annotation System</em> will take some time. But in the meantime you can access <em>openSNP</em> using some simple JSON-methods. Examples can be found for <a href="http://opensnp.org/snps/json/rs9939609/1.json">SNPs</a>, <a href="http://opensnp.org/users.json">users</a> and <a href="http://opensnp.org/phenotypes/json/1,6,8.json">phenotypes</a>. To learn more about how to use those methods you may want to <a href="http://opensnp.org/faq#api">read the FAQ</a> or this blogpost we've written about this.
The promised support for the <em>Distributed Annotation System</em> will take some time. But in the meantime, you can access <em>openSNP</em> using some simple JSON-methods. Examples can be found for <a href="http://opensnp.org/snps/json/rs9939609/1.json">SNPs</a>, <a href="http://opensnp.org/users.json">users</a>, and <a href="http://opensnp.org/phenotypes/json/1,6,8.json">phenotypes</a>. To learn more about how to use those methods you may want to <a href="http://opensnp.org/faq#api">read the FAQ</a> or this blogpost we've written about this.
</p>
<h5>SSL-Support</h5>
<p>

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hello

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<h1>Forgot Password</h1>
Fill out the form below and instructions to reset your password will be emailed to you:<br />
Fill out the form below, and instructions to reset your password will be emailed to you:<br />
<br />
<%= form_tag password_resets_path do %>

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@@ -1,20 +1,20 @@
<p><strong>By signing up for openSNP you declare that you have understood the possible risks and side-effects that can occur by making your genetical and medical information available on this platform. In short:</strong><br/><br/></p>
<p>
<ul>
<li>Data uploaded to the internet can not be fully deleted, there may always be a backup somewhere</li>
<li>By publishing data you expose information about you and your next of kin worldwide</li>
<li>Genetic and medical information can be used by employers, insurance companies and the government to know more about you than you would like</li>
<li>Data uploaded to the internet can not be fully deleted; there may always be a backup somewhere</li>
<li>By publishing data, you expose information about you and your next of kin worldwide</li>
<li>Genetic and medical information can be used by employers, insurance companies, and the government to know more about you than you would like</li>
<li>new findings about your genotypes can be negative</li>
</ul>
</p>
<center><h6>What has been seen can not be unseen</h6></center>
<p>You agree that all data you upload to openSNP will be freely available online (well, except your mail-address and password) under a <a href="http://creativecommons.org/about/cc0">Creative Commons Zero</a> license. The data can be viewed and downloaded through this webpage, RSS-feeds, in future maybe via an API and via FTP. Although you can delete your data from openSNP this does not guarantee that no one else did already create a backup of the data (who may re-publish the data somewhere else).</p>
<center><h6>What has been seen cannot be unseen</h6></center>
<p>You agree that all data you upload to openSNP will be freely available online (well, except your mail-address and password) under a <a href="http://creativecommons.org/about/cc0">Creative Commons Zero</a> license. The data can be viewed and downloaded through this webpage, RSS-feeds, and, in the future, perhaps via an API or FTP. Although you can delete your data from openSNP, this does not guarantee that someone else has not already created a backup of the data (who may re-publish the data somewhere else).</p>
<center><h6>There is zero privacy anyway, get over it</h6></center>
<p>Although you can upload your data using a pseudonym, there is no way to anonymously submit data. Statistically speaking it is really unlikely that your medical and genetic information matches that of someone else. By uploading you do not only disclose information about yourself, but also about your next kinship (parents and siblings), that shares half of a genome with you. Before uploading any genetical data you should make sure that those people approve of you doing so. This is especially important if you have monozygotic twin, who shares all of your genome!</p>
<p>Although you can upload your data using a pseudonym, there is no way to anonymously submit data. Statistically speaking, it is really unlikely that your medical and genetic information matches that of someone else. By uploading, you do not only disclose information about yourself but also about your next kinship (parents and siblings), who share half of a genome with you. Before uploading any genetical data, you should make sure that those people approve of you doing so. This is especially important if you have a monozygotic twin, who shares all of your genome!</p>
<center><h6>Jobs, insurance, the government</h6></center>
<p>Medical and genetic data can be used to discriminate people. Due to medical or genetic information an employer may not give you a job, an insurance company may request higher payments and who knows what any <em>evil™</em> government will do with your data? Although some countries have laws against genetic discrimination, these laws certainly will not cover possible discrimination scenarios and could change in the future. Again: These are side effects and risks which also can apply to your kinship, if you chose to upload this information.</p>
<p>Medical and genetic data can be used to discriminate against people. Due to medical or genetic information, an employer may not give you a job, an insurance company may request higher payments, and who knows what any <em>evil™</em> government will do with your data? Although some countries have laws against genetic discrimination, these laws certainly will not cover all possible discrimination scenarios and could change in the future. Again: these are side effects and risks which also can apply to your kinship if you chose to upload this information.</p>
<center><h6>Knowledge about genes and SNPs is not static</h6></center>
<p>Nearly every week there are new scientific publications that find new associations between certain traits (like diseases) with existing genetic information. Because of this you should not publish your data just because it currently looks harmless and unsuspicious. It may be true that your genotyping data is of no greater interest for your employer, your insurance company or the government right now, but this can easily change (<strong>Remember: One of the reasons to upload your data here in the first place is, to enable everyone to find such new associations</strong>).</p>
<p>Think of the hypothetical <em><a href="http://www.snpedia.com/index.php/Rs666">SNP rs666</a></em>. One day after you upload your genotyping-data to this website, a new publication finds that your genotype at <em>rs666</em> will give you, your siblings and your parents a fatal disease that will most certainly strike all of you. Due to this disease you (and you kin) may lose your jobs and your insurance. Chances for a association of this kind may be small, but by uploading the data you are nonetheless taking this risk!</p>
<center><h6>Spam-accounts</h6></center>
<p>Nearly every week there are new scientific publications that find new associations between certain traits (like diseases) with existing genetic information. Because of this, you should not publish your data just because it currently looks harmless and unsuspicious. It may be true that your genotyping data is of no great interest to your employer, your insurance company, or the government right now, but this can easily change (<strong>Remember: one of the reasons to upload your data here in the first place is to enable everyone to find such new associations</strong>).</p>
<p>Think of the hypothetical <em><a href="http://www.snpedia.com/index.php/Rs666">SNP rs666</a></em>. One day after you upload your genotyping-data to this website, a new publication finds that your genotype at <em>rs666</em> will give you, your siblings and your parents a fatal disease that will most certainly strike all of you. Due to this disease you (and you kin) may lose your jobs and your insurance. Chances for an association of this kind may be small, but by uploading the data you are nonetheless taking this risk!</p>
<center><h6>Spam accounts</h6></center>
<p>Accounts which only serve advertising will be deleted.</p>

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@@ -18,7 +18,7 @@
</div>
<div id="collapseOne" class="accordion-body collapse in">
<div class="accordion-inner">
<p>If you got genotyped by <a href="http://www.23andme.com">23andMe</a>, <a href="http://www.decodeme.com/">deCODEme</a> or <a href="http://www.familytreedna.com/">FamilyTreeDNA</a> you can upload the raw genotype data which you can download from your DTC test provider. The data will then be openly available for the world to see and download. We also parse these SNPs and annotate them.</p><p>For annotation we include the manually curated <a href="http://www.snpedia.com">SNPedia</a> and find Open Access primary publications which appear in the journals of <a href="http://www.plos.org">The Public Library of Science</a> (PLoS), a Open Access publishing group. Additionally we screen <a href="http://www.mendeley.com/">Mendeley</a>, a crowd-sourced repository of scientific publications.</p><p>You can also publish some of your phenotypes so some day it might get possible to associate some SNPs with phenotypes (because of this we really would like to encourage you to do so, helping science generates this warm, fuzzy feeling inside of you).</p><p>And of course you can also share your knowledge about SNPs and phenotypes with other users and can socialize.</p>
<p>If you got genotyped by <a href="http://www.23andme.com">23andMe</a>, <a href="http://www.decodeme.com/">deCODEme</a>, or <a href="http://www.familytreedna.com/">FamilyTreeDNA</a>, you can upload the raw genotype data downloaded from your DTC test provider. The data will then be openly available for the world to see and download. We also parse these SNPs and annotate them.</p><p>For annotation we include the manually curated <a href="http://www.snpedia.com">SNPedia</a> and find Open Access primary publications which appear in the journals of <a href="http://www.plos.org">The Public Library of Science</a> (PLoS), a Open Access publishing group. Additionally, we screen <a href="http://www.mendeley.com/">Mendeley</a>, a crowd-sourced repository of scientific publications.</p><p>You can also publish some of your phenotypes so, someday, it might become possible to associate some SNPs with phenotypes (because of this we really would like to encourage you to do so, helping science generates this warm, fuzzy feeling inside of you).</p><p>And, of course, you can also share your knowledge about SNPs and phenotypes with other users and can socialize.</p>
</div>
</div>
</div>
@@ -30,7 +30,7 @@
</div>
<div id="collapseTwo" class="accordion-body collapse">
<div class="accordion-inner">
The site is hosted and was coded by <a href="http://www.twitter.com/gedankenstuecke">Bastian</a>, <a href="http://twitter.com/helgerausch">Helge</a> and <a href="http://twitter.com/#!/PhilippBayer">Philipp</a>. Bastian and Philipp did their undergraduate studies in Life Sciences and are currently doing their master-programmes. Bastian and Philipp are PhD-candidates in bioinformatics. Helge is the only “real” web developer on the team and has helped us a lot in testing much of the things we did. We have one former member: <a href="https://plus.google.com/108875984450420228123/posts">Fabian</a>, who studies Biology. We are not working full time on this project, this is more of a hobby. Please give us some time to answer your questions, fix bugs and stuff like this as we are doing this in our free time besides our studies and day jobs.
The site is hosted and was coded by <a href="http://www.twitter.com/gedankenstuecke">Bastian</a>, <a href="http://twitter.com/helgerausch">Helge</a> and <a href="http://twitter.com/#!/PhilippBayer">Philipp</a>. Bastian and Philipp did their undergraduate studies in Life Sciences and are currently doing their master-programmes. Bastian and Philipp are PhD-candidates in bioinformatics. Helge is the only “real” web developer on the team and has helped us a lot in testing much of the things we did. We have one former member: <a href="https://plus.google.com/108875984450420228123/posts">Fabian</a>, who studies Biology. We are not working full time on this project; this is more of a hobby. Please give us some time to answer your questions, fix bugs and stuff like this as we are doing this in our free time besides our studies and day jobs.
</div>
</div>
</div>
@@ -114,7 +114,7 @@
</div>
<div id="collapseNine" class="accordion-body collapse">
<div class="accordion-inner">
Completely open: Everyone can see everything you enter or upload (except your private messages and your password, of course). We warn every user twice about this: Once during the user-creation and once before the genotyping-file-upload. You can find more information about the risks of publishing the data by <%=link_to "reading the disclaimer", "/disclaimer"%>
Completely open: everyone can see everything you enter or upload (except your private messages and your password, of course). We warn every user twice about this: once during the user-creation and once before the genotyping-file-upload. You can find more information about the risks of publishing the data by <%=link_to "reading the disclaimer", "/disclaimer"%>
</div>
</div>
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@@ -126,14 +126,14 @@
</div>
<div id="collapseTen" class="accordion-body collapse">
<div class="accordion-inner">
You can easily add this phenotype as long as you are logged in. Just visit <%=link_to("the page for phenotype creation", {:controller => "phenotypes",:action => "new"})%> and enter a name and a description that enables other users to understand what you are interested in.
You can easily add this phenotype as long as you are logged in. Just visit <%=link_to("the page for phenotype creation", {:controller => "phenotypes",:action => "new"})%>, and enter a name and a description that enables other users to understand what you are interested in.
</div>
</div>
</div>
<div class="accordion-group">
<div class="accordion-heading">
<a class="accordion-toggle" data-toggle="collapse" data-parent="#accordion2" href="#collapseEleven">
<legend>I've found a bug, what can I do?</legend>
<legend>I've found a bug. What can I do?</legend>
</a>
</div>
<div id="collapseEleven" class="accordion-body collapse">
@@ -156,7 +156,7 @@
</div>
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<p>We can offer you data, hopefully someday even lots of data. <em>23andMe</em> alone genotyped already over 100.000 people and more and more of them are sharing their SNPs, as well as their phenotypes.</p><p> Logged-In users can search our database for users with specific phenotypes and mass-download all corresponding SNP-datasets. This allows you to get datasets like <em>"All genotyping files of openSNP-users that have Alzheimer"</em> and the corresponding control group.</p><p> If you'd like to be informed about new genotyping results in general, or just about all new data sets for a specific phenotype, you can use the RSS-feeds we offer.</p>
<p>We can offer you data, hopefully someday even lots of data. <em>23andMe</em> alone genotyped already over 100.000 people, and more and more of them are sharing their SNPs, as well as their phenotypes.</p><p> Logged-In users can search our database for users with specific phenotypes and mass-download all corresponding SNP-datasets. This allows you to get datasets like <em>"All genotyping files of openSNP-users that have Alzheimer"</em> and the corresponding control group.</p><p> If you'd like to be informed about new genotyping results in general, or just about all new data sets for a specific phenotype, you can use the RSS-feeds we offer.</p>
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You can easily add this phenotype as long as you are logged in. Just visit <%=link_to("the page for phenotype creation", {:controller => "phenotypes",:action => "new"})%> and enter a name and a description that enables other users to understand what you are interested in.
You can easily add this phenotype as long as you are logged in. Just visit <%=link_to("the page for phenotype creation", {:controller => "phenotypes",:action => "new"})%>, and enter a name and a description that enables other users to understand what you are interested in.
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This option is only available for logged-in users. Just visit the phenotype-page of your choice and click on the download-links for the variations you are interested in. Our server will grab all the data for you, make a handy zip-file out of it and send you the download link via email, as this can be a lot of data.
This option is only available for logged-in users. Just visit the phenotype-page of your choice, and click on the download-links for the variations you are interested in. Our server will grab all the data for you, make a handy zip-file out of it and send you the download link via email, as this can be a lot of data.
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There's a Public Domain Python3-script located on github here: <a href="https://gist.github.com/1626642">Click this link.</a> Feel free to download and change this script.
There's a Public Domain Python3-script <a href="https://gist.github.com/1626642">on GitHub</a>. Feel free to download and change this script.
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If you have used openSNP (code or data) in your work we would be really happy if you could <a href="journals.plos.org/plosone/article?id=10.1371/journal.pone.0089204">cite our paper, which was published in PLOS ONE in 2014</a>.
If you have used openSNP (code or data) in your work, we would be really happy if you could <a href="journals.plos.org/plosone/article?id=10.1371/journal.pone.0089204">cite our paper, which was published in PLOS ONE in 2014</a>.
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<strong>1.</strong>You should read the description on the phenotype you are about to enter. Often the description gives further details on which kind of answers people are interested in. You can also take a look on the answers which are given so far by other users. This should also give you a feeling about what kind of information is wanted for this phenotype. <br/><strong>2.</strong> As soon as you start to enter your own variation we will try to auto-complete your writing to avoid duplicate entries into the openSNP-database. Having multiple entries for the same thing, like "blue-green" plus "green-blue" in case of eye-colour makes it harder for (citizen) scientists to use the data for their studies. <br/><strong>3.</strong> The thing you are about to enter doesn't get auto-completed? Great. You are about to enter a variation which has not been reported so far, have fun entering your data!
<strong>1.</strong>You should read the description on the phenotype you are about to enter. Often the description gives further details on which kind of answers people are interested in. You can also take a look at the answers which are given so far by other users. This should also give you a feeling about what kind of information is wanted for this phenotype. <br/><strong>2.</strong> As soon as you start to enter your own variation, we will try to auto-complete your writing to avoid duplicate entries into the openSNP database. Having multiple entries for the same thing, like "blue-green" plus "green-blue" in case of eye-colour makes it harder for (citizen) scientists to use the data for their studies. <br/><strong>3.</strong> The thing you are about to enter doesn't get auto-completed? Great. You are about to enter a variation which has not been reported so far, have fun entering your data!
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<strong>1.</strong> Use a reasonable name for your characteristic. Don't make it too long, but at the same time make sure that people get the general idea of what you want to know. <br/><strong>2.</strong> You should also make sure that the same phenotype is not already available in the openSNP-database. As soon as you start writing your characteristics name openSNP will try to auto-complete what you are writing. This should reduce duplicate phenotypes, so if you are about to enter "eye-colour" you will get a suggestions for the already available "eye-color" (Sorry, we can't solve the AE / BE issue here).<br/><strong>3.</strong> Write a description about the characteristic you are interested in. Give users some words why this is interesting. Maybe add what research has been done so far on this phenotype. Links to further web-resources and/or Wikipedia might also be a good idea. If you already have suggestions which different answers might apply to this phenotype: List them in the description. <br/><strong>4.</strong> Enter your own variation: The last field, "variation" is meant to carry your own variation for this phenotype. Don't enter all possible answers (You can list those in the description). Other users can easily add their own variation and take your suggestions from the description or - if you forgot to list a possible answer - give completely new answers.
<strong>1.</strong> Use a reasonable name for your characteristic. Don't make it too long, but at the same time make sure that people get the general idea of what you want to know. <br/><strong>2.</strong> You should also make sure that the same phenotype is not already available in the openSNP database. As soon as you start writing your characteristics name, openSNP will try to autocomplete what you are writing. This should reduce duplicate phenotypes, so if you're about to enter "eye-colour" you will get suggestions for the already available "eye-color" (Sorry, we can't solve the AE / BE issue here).<br/><strong>3.</strong> Write a description about the characteristic you are interested in. Explain to users why this is interesting. Maybe add a note about what research has been done so far on this phenotype. Links to further web-resources and/or Wikipedia might also be a good idea. If you already have suggestions which different answers might apply to this phenotype, list them in the description. <br/><strong>4.</strong> Enter your own variation: the last field, "variation" is meant to carry your own variation for this phenotype. Don't enter all possible answers (You can list those in the description). Other users can easily add their own variation and take your suggestions from the description or, if you forgot to list a possible answer, give completely new answers.
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If you connect your <em>Fitbit</em> account with <em>openSNP</em> we will save data for up to three different categories: Activities, Body and Sleep. In the activity category we will save your step-count and the number of floors you've climbed for each day. For the body category we will save your Body Mass Index and your weight for each day. In the sleep category we will save how many minutes you have slept, how many minutes you were awake while you tried to sleep, how long it took you to fall asleep and the number of times you awoke for each night.<br/><br/>If you connect your <em>Fitbit</em> account we will also save as much data of past days as it's possible to get through the API of <em>Fitbit</em>. This data is as public as are the genotyping datasets or all standard phenotypes which are entered into openSNP. So please be sure you want the world to be able to see this data.
If you connect your <em>Fitbit</em> account with <em>openSNP</em> we will save data for up to three different categories: Activities, Body and Sleep. In the activity category, we will save your step-count and the number of floors you've climbed for each day. For the body category, we will save your Body Mass Index and your weight for each day. In the sleep category, we will save how many minutes you've slept, how many minutes you were awake while you tried to sleep, how long it took you to fall asleep, and the number of times you awoke for each night.<br/><br/>If you connect your <em>Fitbit</em> account, we will also save as much data of past days as it's possible to get through the <em>Fitbit</em> API. This data is as public as are the genotyping datasets or all standard phenotypes which are entered into openSNP. So please be sure you want the world to be able to see this data.
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Yes, you can choose which for which categories we should save the data. For example you can share our activity-data, so people can see the number of steps you have taken for each day, along with the floors you have climbed, but keep your body and sleep data on <em>FitBit</em>.Two things you should keep in mind: You can (de)activate the saving of data for different categories at any time. <br/><br/>1. If you deactivate a category we will delete all of your data of this category from <em>openSNP</em> (but of course not on <em>Fitbit</em>).<br/>2. If activate a category we will try to save as many data from the past as possible. So if there is past data you don't want to share you probably should not activate it (or delete the data from <em>Fitbit</em>).
Yes, you can choose which categories we should save. For example, you can share our activity data so people can see the number of steps you have taken for each day, along with the floors you have climbed but keep your body and sleep data on <em>FitBit</em>. Two things you should keep in mind: you can (de)activate the saving of data for different categories at any time. <br/><br/>1. If you deactivate a category we will delete all of your data of this category from <em>openSNP</em> (but of course not on <em>Fitbit</em>).<br/>2. If activate a category we will try to save as many data from the past as possible. So if there is past data you don't want to share, you probably should not activate it (or delete the data from <em>Fitbit</em>).
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No, if you connect your <em>Fitbit</em> account with <em>openSNP</em> we only have read-access. The read-access gives us access to all data you have in your <em>Fitbit</em> account, but we will only read and save the data for which you have given us permission. We're sorry that you have to trust us in this point but the <em>Fitbit</em> API currently doesn't allow for a more granular setting.
No, if you connect your <em>Fitbit</em> account with <em>openSNP</em> we only have read-access. The read-access gives us access to all data you have in your <em>Fitbit</em> account, but we will only read and save the data for which you have given us permission. We're sorry that you have to trust us in this regard, but the <em>Fitbit</em> API currently doesn't allow for a more granular setting.
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Yes, once your <em>Fitbit</em> account is connected and set up we will get an notification from <em>Fitbit</em> each time you enter or change any data in their system. So each time your tracker uploads new data to <em>Fitbit</em> we will get those changes as well. This also works for past records. So if you change or delete entries on the <em>Fitbit</em> website those changes will be reflected on <em>openSNP</em> as well.
Yes, once your <em>Fitbit</em> account is connected and set up, we will get an notification from <em>Fitbit</em> each time you enter or change any data in their system. So each time your tracker uploads new data to <em>Fitbit</em>, we will get those changes as well. This also works for past records. So if you change or delete entries on the <em>Fitbit</em> website, those changes will be reflected on <em>openSNP</em> as well.
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<legend>Using JSON</legend>
We provide some methods to make it easier to get data back from <em>openSNP</em>. Currently we are implementing some <i><a href="http://en.wikipedia.org/wiki/JSON">JavaScript Object Notation</a></i> (short: JSON) methods that will make it easier to code some awesome <em>openSNP</em>-utilizing stuff. As you can see on the Wikipedia-page there are many JSON-parsers around for all major programming languages and it is fairly human readable as well. Plus: It is one of the de facto webstandards for APIs. The full overview of the openSNP JSON API is on <a href="https://github.com/gedankenstuecke/snpr/wiki/JSON-API">GitHub at this link</a>.
We provide some methods to make it easier to get data back from <em>openSNP</em>. Currently we are implementing some <i><a href="http://en.wikipedia.org/wiki/JSON">JavaScript Object Notation</a></i> (short: JSON) methods that will make it easier to code some awesome <em>openSNP</em>-utilizing stuff. As you can see on the Wikipedia-page, there are many JSON-parsers around for all major programming languages, and it is fairly human readable as well. Plus: it's one of the de-facto webstandards for APIs. The full overview of the openSNP JSON API is <a href="https://github.com/gedankenstuecke/snpr/wiki/JSON-API">on GitHub</a>.
<legend>The method I need is missing and/or I need more help!?</legend>
There are many ways in which this problem can be fixed. First of all: If you are able to code some <em>Rails</em> and have got some basic understanding of <em>JSON</em> feel invited to help us with the development of <em>openSNP</em>. The source code is freely available at <a href="https://github.com/gedankenstuecke/snpr">GitHub</a> and we are always looking for some motivated people who want to join us. Just start coding the stuff you are interested in and make a pull request. Or what about <a href="http://groups.google.com/group/snpr-development">joining the openSNP development mailinglist/Google group and you can get to know us a bit better?</a> <br/>But don't worry if you don't feel like spending that much time with us (letting alone having that much time left): We are working on implementing more of this stuff, so if you've got a great idea that we should absolutely include just let us know: Write us at <a href="mailto:info@opensnp.org">info@opensnp.org</a> or drop <a href="http://opensnp.org/messages/new?user_to_send=23">Philipp</a> or <a href="http://opensnp.org/messages/new?user_to_send=1">Basti</a> a note. And the same is true if you need some more support with those methods already in place.
There are many ways in which this problem can be fixed. First of all, if you are able to code some <em>Rails</em> and have got some basic understanding of <em>JSON</em> feel invited to help us with the development of <em>openSNP</em>. The source code is freely available at <a href="https://github.com/gedankenstuecke/snpr">GitHub</a>, and we are always looking for some motivated people who want to join us. Just start coding the stuff you are interested in and make a pull request. Or what about <a href="http://groups.google.com/group/snpr-development">joining the openSNP development mailinglist/Google group and you can get to know us a bit better?</a> <br/>But don't worry; if you don't feel like spending that much time with us (let alone having that much time left), we're working on implementing more features. So if you've got a great idea that we should absolutely include, just let us know: write us at <a href="mailto:info@opensnp.org">info@opensnp.org</a> or drop <a href="http://opensnp.org/messages/new?user_to_send=23">Philipp</a> or <a href="http://opensnp.org/messages/new?user_to_send=1">Basti</a> a note. And the same is true if you need some more support with those methods already in place.
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