Merged fitbit-queues into one. Slight refactor to find out why mendeley_details breaks (still broken). Currently can't install Ruby 2.0 as debugger-gem breaks, not supported yet.

app/workers/fitbit_dump.rb

@@ -2,7 +2,7 @@
 
 class FitbitDump
    include Sidekiq::Worker
-   sidekiq_options :queue => :fitbitdump
+   sidekiq_options :queue => :fitbit
 
    def perform(target_address,fitbit_profile_id)
      fp = FitbitProfile.find_by_id(fitbit_profile_id)

app/workers/fitbit_edit.rb

@@ -2,7 +2,7 @@
 
 class FitbitEdit
    include Sidekiq::Worker
-   sidekiq_options :queue => :fitbitedit
+   sidekiq_options :queue => :fitbit
 
    def perform(fitbit_profile_id)
      @fitbit_profile = FitbitProfile.find_by_id(fitbit_profile_id)

app/workers/fitbit_endsubscription.rb

@@ -2,7 +2,7 @@
 
 class FitbitEndSubscription
    include Sidekiq::Worker
-   sidekiq_options :queue => :fitbitendsubscription
+   sidekiq_options :queue => :fitbit
 
    def perform(fitbit_profile_id)
      @fitbit_profile = FitbitProfile.find_by_id(fitbit_profile_id)

app/workers/fitbit_init.rb

@@ -2,7 +2,7 @@
 
 class FitbitInit
    include Sidekiq::Worker
-   sidekiq_options :queue => :fitbitinit
+   sidekiq_options :queue => :fitbit
 
    def perform(fitbit_profile_id)
      @client = Fitgem::Client.new(:consumer_key => APP_CONFIG[:fitbit_consumer_key], :consumer_secret => APP_CONFIG[:fitbit_consumer_secret])

app/workers/fitbit_notification.rb

@@ -2,7 +2,7 @@
 
 class FitbitNotification
    include Sidekiq::Worker
-   sidekiq_options :queue => :fitbitnotification
+   sidekiq_options :queue => :fitbit
 
    def perform(notification)
      puts notification

app/workers/mendeleydetails.rb

@@ -3,42 +3,49 @@ require "net/http"
 require "json"
 
 class MendeleyDetails
-   include Sidekiq::Worker
-   sidekiq_options :queue => :mendeley_details
+  include Sidekiq::Worker
+  sidekiq_options :queue => :mendeley_details
 
-   def perform(mendeley_paper_id)
-      @mendeley_paper = MendeleyPaper.find_by_id(mendeley_paper_id.to_i)
+  def perform(mendeley_paper_id)
+     # Logging stuff
+     Rails.logger.level = 0
+     Rails.logger = Logger.new("#{Rails.root}/log/mendeleydetails_#{Rails.env}.log")
+     @mendeley_paper = MendeleyPaper.find_by_id(mendeley_paper_id.to_i)
 
-      key_handle = File.open(::Rails.root.to_s+"/key_mendeley.txt")
-      api_key = key_handle.readline.rstrip
+     key_handle = File.open(::Rails.root.to_s+"/key_mendeley.txt")
+     api_key = key_handle.readline.rstrip
 
-      detail_url = "http://api.mendeley.com/oapi/documents/details/" + @mendeley_paper.uuid + "/?consumer_key="+api_key
-      begin
-         detail_resp = Net::HTTP.get_response(URI.parse(detail_url))
-      rescue
-         retry
-      end
+     detail_url = "http://api.mendeley.com/oapi/documents/details/" + @mendeley_paper.uuid + "/?consumer_key="+api_key
+     begin
+        detail_resp = Net::HTTP.get_response(URI.parse(detail_url))
+     rescue
+        retry
+     end
 
-      detail_data = detail_resp.body
-      detail_result = JSON.parse(detail_data)
+     detail_data = detail_resp.body
+     detail_result = JSON.parse(detail_data)
 
-      if detail_result["oa_journal"] != false
-         @mendeley_paper.open_access = true
-      else
-         @mendeley_paper.open_access = false
-      end
+     if detail_result["oa_journal"] != false
+        @mendeley_paper.open_access = true
+     else
+        @mendeley_paper.open_access = false
+     end
 
-      print "mendeley details: updated oa- and reader-status\n"
-      if detail_result["stats"]
-        @mendeley_paper.reader = detail_result["stats"]["readers"]
-      elsif detail_result["reader"]
-        @mendeley_paper.reader = detail_result["reader"]
-      else
-        @mendeley_paper.reader = "Unknown"
-      end
+     log "mendeley details: updated oa- and reader-status\n"
+     if detail_result["stats"]
+       @mendeley_paper.reader = detail_result["stats"]["readers"]
+     elsif detail_result["reader"]
+       @mendeley_paper.reader = detail_result["reader"]
+     else
+       @mendeley_paper.reader = "Unknown"
+     end
 
-      @mendeley_paper.save
-      print "-> sleep for 5 secs\n"
-      sleep(5)
-   end
+     @mendeley_paper.save
+     log "-> sleep for 5 secs\n"
+     sleep(5)
+  end
+
+  def log msg
+    Rails.logger.info "#{DateTime.now}: #{msg}"
+  end
 end

app/workers/plos.rb

@@ -5,9 +5,9 @@ require 'rexml/document'
 class Plos
   include Sidekiq::Worker
   sidekiq_options :queue => :plos
-  
+
   def is_illegal_snp(name)
-    # we don't need mitochondrial or VG-SNPs as these just result in noise 
+    # we don't need mitochondrial or VG-SNPs as these just result in noise
     # from the PLOS API
     forbidden_names = ["mt-", "vg"]
     if forbidden_names.any? { |part| name[part] }

serverscript

@@ -3,4 +3,4 @@
 screen -d -m -S "Server" bundle exec rails s
 screen -d -m -S "Solr" bundle exec rake sunspot:solr:run
 screen -d -m -S "Redis" redis-server
-screen -d -m -S "Sidekiq" bundle exec sidekiq -q preparse,2 -q parse,2 -q deletegenotype -q fitbitdump -q fitbitedit -q fitbitendsubscription -q fitbitinit -q fitbitnotification -q fixphenotypes -q frequency -q genomegov -q mailnewgenotype -q mendeley_details -q mendeley -q pgp -q plos_details -q plos -q zipfulldata -q snpedia -q zipgenotyping
+screen -d -m -S "Sidekiq" bundle exec sidekiq -q preparse,2 -q parse,2 -q deletegenotype -q fitbit -q fixphenotypes -q frequency -q genomegov -q mailnewgenotype -q mendeley_details -q mendeley -q pgp -q plos_details -q plos -q zipfulldata -q snpedia -q zipgenotyping