mirror of
https://github.com/chenasraf/snpr.git
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* Renaming '.env.example' to '.env' * Removing bootstrap gem * Adding newest version of Bootstrap(3.3.6) and setting it up * Renamed 'database.yml.example' to 'database.yml' * Deleted common.css.scss * Deleting active_admin/application requirement * Adding style file that import all style partials and adding javascript file * Updating application.html.erb and includes(footer and navbar) * Removing from news all the updates(new users, new pheno...) and putting on updates page * Updating user views * Updating phenotype views * Updating index page * Updating FAQ and Stats pages * Updating genotype views * Updating messages views * Updating snps views and signin page * Updating fitbit and picture_phenotype views * Updating warning * Adding base style and variable of style * Adding style of index, faq and stats page * Adding style for user views * Adding style for footer and navbar * Adding modules of style * Adding style for fitbit, genotype, phenotype and message views * Adding style for snps and updates views * Updating serverscript * Adding new logo and RSS new image * Adding style files for: comments, password reset, picture phenotypes, achievements and search results * Removing !important and updating some styles * Updating view from achievements * Updating views from fitbit profiles * Updating genotypes views * Updating navbar view * Updating password reset view * Updating phenotype comments views * Updating phenotypes views * Updating views: search result, snps, user phenotypes and users * Updating views: updates and picture phenotypes * Adding updates page's routes * Modify flash messages and change number of fitbit profiles and genotypes per page(20 -> 15) * Replace will_paginate to a version that works with bootstraps * Change serverscript to make Sidekiq work propely * Updates user's views * Updates script to run only when page is fully loaded * Moves script tags to head and updates flash messages' views * Updates and add style for: picture_phenotypes, snps, userpages, press, warnings * Updates views for: genotypes, messages, fitbit_profiles, phenotype comments, phenotypes * Updates views for: picture phenotype, picture phenotype comments, warnings and errors, snps, snps comments * Updates views for: press, picture phenotype user, user session and snps user * Updates views from: user, updates, press and stats * Updates views from: snps, picture phenotypes, phenotypes, genotypes * Updates views from: fitbit profiles, navbar, application, messages and news * Updates script file * Updates style files * Changes modal views * Renaming '.env.example' to '.env' * Removing bootstrap gem * Adding newest version of Bootstrap(3.3.6) and setting it up * Renamed 'database.yml.example' to 'database.yml' * Deleted common.css.scss * Deleting active_admin/application requirement * Adding style file that import all style partials and adding javascript file * Updating application.html.erb and includes(footer and navbar) * Removing from news all the updates(new users, new pheno...) and putting on updates page * Updating user views * Updating phenotype views * Updating index page * Updating FAQ and Stats pages * Updating genotype views * Updating messages views * Updating snps views and signin page * Updating fitbit and picture_phenotype views * Updating warning * Adding base style and variable of style * Adding style of index, faq and stats page * Adding style for user views * Adding style for footer and navbar * Adding modules of style * Adding style for fitbit, genotype, phenotype and message views * Adding style for snps and updates views * Updating serverscript * Adding new logo and RSS new image * Adding style files for: comments, password reset, picture phenotypes, achievements and search results * Removing !important and updating some styles * Updating view from achievements * Updating views from fitbit profiles * Updating genotypes views * Updating navbar view * Updating password reset view * Updating phenotype comments views * Updating phenotypes views * Updating views: search result, snps, user phenotypes and users * Updating views: updates and picture phenotypes * Adding updates page's routes * Modify flash messages and change number of fitbit profiles and genotypes per page(20 -> 15) * Replace will_paginate to a version that works with bootstraps * Change serverscript to make Sidekiq work propely * Updates user's views * Updates script to run only when page is fully loaded * Moves script tags to head and updates flash messages' views * Updates and add style for: picture_phenotypes, snps, userpages, press, warnings * Updates views for: genotypes, messages, fitbit_profiles, phenotype comments, phenotypes * Updates views for: picture phenotype, picture phenotype comments, warnings and errors, snps, snps comments * Updates views for: press, picture phenotype user, user session and snps user * Updates views from: user, updates, press and stats * Updates views from: snps, picture phenotypes, phenotypes, genotypes * Updates views from: fitbit profiles, navbar, application, messages and news * Updates script file * Updates style files * Changes modal views * Updates script file * Add style file for modal * Updates views from: snp comments, user phenotypes, modal and picture phenotypes * Removes empty style files * Moves comments style to modules directory * Creates a more general class for containers and titles * Removing more specific classes for containers and titles * Changes load order, now variables are loaded before base styles * Replaces all containers and titles classes with the more general class for them * Corrects styles order and organization * Updates minimum height for content container * Organizes and refactors script file * Updates views for fitbit and user * Removes 'test-' from all classes and updates some views * Updates settings view * Updates gitignore * Changes config files * Removes some file from .gitignore * Readds the example files * Changes all unnecessary double-quotes to single-quotes * Corrects script file * Updates hound file to ignore JS files * Hopefully merged both * fixes typos, gem installation * Adds missing pagination gem * Deletes Vagrantfile * Automatically replaced all pre Ruby 1.9 hashes with new style to satisfy Hound * More changes for Hound, triggered by me automatically changing the hash syntax * More hound changes * Fully satisfy the hound * Fix some more style issues, delete some old Vagrant stuff * Fix usermailer complaints * Changed some stuff in fitbit notification worker - prob. needs bigger refactor, long lines, cannot change * Two more borked tests * Get rid of useless asset pipeline errors * Skipping search test for now. * added about us here * disclaimer now also for genotypes * working a bit on the hound * fixed FAQ language
This commit is contained in:
Philipp Bayer
committed by
Bastian Greshake
Bastian Greshake
parent
37a449778e
commit
cf25d77185
@@ -1,2 +1,4 @@
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ruby:
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config_file: .rubocop.yml
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jshint:
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ignore_file: .jshintignore
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1
.jshintignore
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1
.jshintignore
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@@ -0,0 +1 @@
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./app/assets/javascripts/
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7
Gemfile
7
Gemfile
@@ -7,7 +7,6 @@ gem 'rails', '~> 4.2'
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gem 'authlogic' # lots of user-related magic
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gem 'i18n', '>= 0.6.6'
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gem 'rails3-generators'
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gem 'jquery-rails'
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gem 'bcrypt-ruby', require: 'bcrypt'
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gem 'sanitize'
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gem 'recaptcha', require: 'recaptcha/rails'
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@@ -33,6 +32,7 @@ gem 'pg_search'
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gem 'rubyzip'
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gem 'will_paginate'
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gem 'will_paginate-bootstrap'
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gem 'nested_form', git: 'https://github.com/ryanb/nested_form'
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gem 'json'
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gem 'mediawiki-gateway'
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@@ -53,10 +53,9 @@ gem 'whenever', require: false
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gem 'therubyracer'
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gem 'execjs'
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gem 'uglifier'
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gem 'twitter-bootstrap-rails'
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gem 'jquery-ui-rails'
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gem 'jquery-rails'
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gem 'jquery-ui-rails', '~> 4.2.1'
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gem 'sass-rails'
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#group :production do
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# gem 'rpm_contrib'
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#end
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21
Gemfile.lock
21
Gemfile.lock
@@ -97,7 +97,6 @@ GEM
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codeclimate-test-reporter (1.0.8)
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simplecov (<= 0.13)
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coderay (1.1.1)
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commonjs (0.2.7)
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composite_primary_keys (8.1.5)
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activerecord (~> 4.2.0)
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concurrent-ruby (1.0.5)
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@@ -156,18 +155,11 @@ GEM
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rails-dom-testing (>= 1, < 3)
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railties (>= 4.2.0)
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thor (>= 0.14, < 2.0)
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jquery-ui-rails (6.0.1)
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jquery-ui-rails (4.2.1)
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railties (>= 3.2.16)
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json (2.1.0)
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launchy (2.4.3)
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addressable (~> 2.3)
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less (2.6.0)
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commonjs (~> 0.2.7)
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less-rails (2.8.0)
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actionpack (>= 4.0)
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less (~> 2.6.0)
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sprockets (> 2, < 4)
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tilt
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libv8 (3.16.14.19)
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listen (3.1.5)
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rb-fsevent (~> 0.9, >= 0.9.4)
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@@ -374,11 +366,6 @@ GEM
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thread_safe (0.3.6)
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tilt (1.4.1)
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timecop (0.8.1)
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twitter-bootstrap-rails (3.2.2)
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actionpack (>= 3.1)
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execjs (>= 2.2.2, >= 2.2)
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less-rails (>= 2.5.0)
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railties (>= 3.1)
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tzinfo (1.2.3)
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thread_safe (~> 0.1)
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uglifier (3.2.0)
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@@ -399,6 +386,8 @@ GEM
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whenever (0.9.7)
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chronic (>= 0.6.3)
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will_paginate (3.1.5)
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will_paginate-bootstrap (1.0.1)
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will_paginate (>= 3.0.3)
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xpath (2.0.0)
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nokogiri (~> 1.3)
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yajl-ruby (1.3.0)
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@@ -425,7 +414,7 @@ DEPENDENCIES
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guard-rspec
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i18n (>= 0.6.6)
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jquery-rails
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jquery-ui-rails
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jquery-ui-rails (~> 4.2.1)
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json
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launchy
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lograge
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@@ -462,13 +451,13 @@ DEPENDENCIES
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test-unit
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therubyracer
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timecop
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twitter-bootstrap-rails
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uglifier
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uuidtools
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vcr
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webmock
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whenever
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will_paginate
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will_paginate-bootstrap
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BUNDLED WITH
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1.14.6
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BIN
app/assets/fonts/glyphicons-halflings-regular.eot
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BIN
app/assets/fonts/glyphicons-halflings-regular.eot
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app/assets/fonts/glyphicons-halflings-regular.svg
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@@ -0,0 +1,288 @@
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<?xml version="1.0" standalone="no"?>
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<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd" >
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<svg xmlns="http://www.w3.org/2000/svg">
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<metadata></metadata>
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<defs>
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<font id="glyphicons_halflingsregular" horiz-adv-x="1200" >
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<font-face units-per-em="1200" ascent="960" descent="-240" />
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<missing-glyph horiz-adv-x="500" />
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<glyph horiz-adv-x="0" />
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<glyph horiz-adv-x="400" />
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<glyph unicode=" " />
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<glyph unicode=" " horiz-adv-x="1300" />
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<glyph unicode=" " horiz-adv-x="433" />
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|
||||
<glyph unicode="" d="M1000 300v50q-25 0 -55 32q-14 14 -25 31t-16 27l-4 11l-289 747h-69l-300 -754q-18 -35 -39 -56q-9 -9 -24.5 -18.5t-26.5 -14.5l-11 -5v-50h273v50q-49 0 -78.5 21.5t-11.5 67.5l69 176h293l61 -166q13 -34 -3.5 -66.5t-55.5 -32.5v-50h312zM412 691l134 342l121 -342 h-255zM1100 150v-100q0 -21 -14.5 -35.5t-35.5 -14.5h-1000q-21 0 -35.5 14.5t-14.5 35.5v100q0 21 14.5 35.5t35.5 14.5h1000q21 0 35.5 -14.5t14.5 -35.5z" />
|
||||
<glyph unicode="" d="M50 1200h1100q21 0 35.5 -14.5t14.5 -35.5v-1100q0 -21 -14.5 -35.5t-35.5 -14.5h-1100q-21 0 -35.5 14.5t-14.5 35.5v1100q0 21 14.5 35.5t35.5 14.5zM611 1118h-70q-13 0 -18 -12l-299 -753q-17 -32 -35 -51q-18 -18 -56 -34q-12 -5 -12 -18v-50q0 -8 5.5 -14t14.5 -6 h273q8 0 14 6t6 14v50q0 8 -6 14t-14 6q-55 0 -71 23q-10 14 0 39l63 163h266l57 -153q11 -31 -6 -55q-12 -17 -36 -17q-8 0 -14 -6t-6 -14v-50q0 -8 6 -14t14 -6h313q8 0 14 6t6 14v50q0 7 -5.5 13t-13.5 7q-17 0 -42 25q-25 27 -40 63h-1l-288 748q-5 12 -19 12zM639 611 h-197l103 264z" />
|
||||
<glyph unicode="" d="M1200 1100h-1200v100h1200v-100zM50 1000h400q21 0 35.5 -14.5t14.5 -35.5v-900q0 -21 -14.5 -35.5t-35.5 -14.5h-400q-21 0 -35.5 14.5t-14.5 35.5v900q0 21 14.5 35.5t35.5 14.5zM650 1000h400q21 0 35.5 -14.5t14.5 -35.5v-400q0 -21 -14.5 -35.5t-35.5 -14.5h-400 q-21 0 -35.5 14.5t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5zM700 900v-300h300v300h-300z" />
|
||||
<glyph unicode="" d="M50 1200h400q21 0 35.5 -14.5t14.5 -35.5v-900q0 -21 -14.5 -35.5t-35.5 -14.5h-400q-21 0 -35.5 14.5t-14.5 35.5v900q0 21 14.5 35.5t35.5 14.5zM650 700h400q21 0 35.5 -14.5t14.5 -35.5v-400q0 -21 -14.5 -35.5t-35.5 -14.5h-400q-21 0 -35.5 14.5t-14.5 35.5v400 q0 21 14.5 35.5t35.5 14.5zM700 600v-300h300v300h-300zM1200 0h-1200v100h1200v-100z" />
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||||
<glyph unicode="" d="M50 1000h400q21 0 35.5 -14.5t14.5 -35.5v-350h100v150q0 21 14.5 35.5t35.5 14.5h400q21 0 35.5 -14.5t14.5 -35.5v-150h100v-100h-100v-150q0 -21 -14.5 -35.5t-35.5 -14.5h-400q-21 0 -35.5 14.5t-14.5 35.5v150h-100v-350q0 -21 -14.5 -35.5t-35.5 -14.5h-400 q-21 0 -35.5 14.5t-14.5 35.5v800q0 21 14.5 35.5t35.5 14.5zM700 700v-300h300v300h-300z" />
|
||||
<glyph unicode="" d="M100 0h-100v1200h100v-1200zM250 1100h400q21 0 35.5 -14.5t14.5 -35.5v-400q0 -21 -14.5 -35.5t-35.5 -14.5h-400q-21 0 -35.5 14.5t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5zM300 1000v-300h300v300h-300zM250 500h900q21 0 35.5 -14.5t14.5 -35.5v-400 q0 -21 -14.5 -35.5t-35.5 -14.5h-900q-21 0 -35.5 14.5t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5z" />
|
||||
<glyph unicode="" d="M600 1100h150q21 0 35.5 -14.5t14.5 -35.5v-400q0 -21 -14.5 -35.5t-35.5 -14.5h-150v-100h450q21 0 35.5 -14.5t14.5 -35.5v-400q0 -21 -14.5 -35.5t-35.5 -14.5h-900q-21 0 -35.5 14.5t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5h350v100h-150q-21 0 -35.5 14.5 t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5h150v100h100v-100zM400 1000v-300h300v300h-300z" />
|
||||
<glyph unicode="" d="M1200 0h-100v1200h100v-1200zM550 1100h400q21 0 35.5 -14.5t14.5 -35.5v-400q0 -21 -14.5 -35.5t-35.5 -14.5h-400q-21 0 -35.5 14.5t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5zM600 1000v-300h300v300h-300zM50 500h900q21 0 35.5 -14.5t14.5 -35.5v-400 q0 -21 -14.5 -35.5t-35.5 -14.5h-900q-21 0 -35.5 14.5t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5z" />
|
||||
<glyph unicode="" d="M865 565l-494 -494q-23 -23 -41 -23q-14 0 -22 13.5t-8 38.5v1000q0 25 8 38.5t22 13.5q18 0 41 -23l494 -494q14 -14 14 -35t-14 -35z" />
|
||||
<glyph unicode="" d="M335 635l494 494q29 29 50 20.5t21 -49.5v-1000q0 -41 -21 -49.5t-50 20.5l-494 494q-14 14 -14 35t14 35z" />
|
||||
<glyph unicode="" d="M100 900h1000q41 0 49.5 -21t-20.5 -50l-494 -494q-14 -14 -35 -14t-35 14l-494 494q-29 29 -20.5 50t49.5 21z" />
|
||||
<glyph unicode="" d="M635 865l494 -494q29 -29 20.5 -50t-49.5 -21h-1000q-41 0 -49.5 21t20.5 50l494 494q14 14 35 14t35 -14z" />
|
||||
<glyph unicode="" d="M700 741v-182l-692 -323v221l413 193l-413 193v221zM1200 0h-800v200h800v-200z" />
|
||||
<glyph unicode="" d="M1200 900h-200v-100h200v-100h-300v300h200v100h-200v100h300v-300zM0 700h50q0 21 4 37t9.5 26.5t18 17.5t22 11t28.5 5.5t31 2t37 0.5h100v-550q0 -22 -25 -34.5t-50 -13.5l-25 -2v-100h400v100q-4 0 -11 0.5t-24 3t-30 7t-24 15t-11 24.5v550h100q25 0 37 -0.5t31 -2 t28.5 -5.5t22 -11t18 -17.5t9.5 -26.5t4 -37h50v300h-800v-300z" />
|
||||
<glyph unicode="" d="M800 700h-50q0 21 -4 37t-9.5 26.5t-18 17.5t-22 11t-28.5 5.5t-31 2t-37 0.5h-100v-550q0 -22 25 -34.5t50 -14.5l25 -1v-100h-400v100q4 0 11 0.5t24 3t30 7t24 15t11 24.5v550h-100q-25 0 -37 -0.5t-31 -2t-28.5 -5.5t-22 -11t-18 -17.5t-9.5 -26.5t-4 -37h-50v300 h800v-300zM1100 200h-200v-100h200v-100h-300v300h200v100h-200v100h300v-300z" />
|
||||
<glyph unicode="" d="M701 1098h160q16 0 21 -11t-7 -23l-464 -464l464 -464q12 -12 7 -23t-21 -11h-160q-13 0 -23 9l-471 471q-7 8 -7 18t7 18l471 471q10 9 23 9z" />
|
||||
<glyph unicode="" d="M339 1098h160q13 0 23 -9l471 -471q7 -8 7 -18t-7 -18l-471 -471q-10 -9 -23 -9h-160q-16 0 -21 11t7 23l464 464l-464 464q-12 12 -7 23t21 11z" />
|
||||
<glyph unicode="" d="M1087 882q11 -5 11 -21v-160q0 -13 -9 -23l-471 -471q-8 -7 -18 -7t-18 7l-471 471q-9 10 -9 23v160q0 16 11 21t23 -7l464 -464l464 464q12 12 23 7z" />
|
||||
<glyph unicode="" d="M618 993l471 -471q9 -10 9 -23v-160q0 -16 -11 -21t-23 7l-464 464l-464 -464q-12 -12 -23 -7t-11 21v160q0 13 9 23l471 471q8 7 18 7t18 -7z" />
|
||||
<glyph unicode="" d="M1000 1200q0 -124 -88 -212t-212 -88q0 124 88 212t212 88zM450 1000h100q21 0 40 -14t26 -33l79 -194q5 1 16 3q34 6 54 9.5t60 7t65.5 1t61 -10t56.5 -23t42.5 -42t29 -64t5 -92t-19.5 -121.5q-1 -7 -3 -19.5t-11 -50t-20.5 -73t-32.5 -81.5t-46.5 -83t-64 -70 t-82.5 -50q-13 -5 -42 -5t-65.5 2.5t-47.5 2.5q-14 0 -49.5 -3.5t-63 -3.5t-43.5 7q-57 25 -104.5 78.5t-75 111.5t-46.5 112t-26 90l-7 35q-15 63 -18 115t4.5 88.5t26 64t39.5 43.5t52 25.5t58.5 13t62.5 2t59.5 -4.5t55.5 -8l-147 192q-12 18 -5.5 30t27.5 12z" />
|
||||
<glyph unicode="🔑" d="M250 1200h600q21 0 35.5 -14.5t14.5 -35.5v-400q0 -21 -14.5 -35.5t-35.5 -14.5h-150v-500l-255 -178q-19 -9 -32 -1t-13 29v650h-150q-21 0 -35.5 14.5t-14.5 35.5v400q0 21 14.5 35.5t35.5 14.5zM400 1100v-100h300v100h-300z" />
|
||||
<glyph unicode="🚪" d="M250 1200h750q39 0 69.5 -40.5t30.5 -84.5v-933l-700 -117v950l600 125h-700v-1000h-100v1025q0 23 15.5 49t34.5 26zM500 525v-100l100 20v100z" />
|
||||
</font>
|
||||
</defs></svg>
|
||||
|
After Width: | Height: | Size: 106 KiB |
BIN
app/assets/fonts/glyphicons-halflings-regular.ttf
Normal file
BIN
app/assets/fonts/glyphicons-halflings-regular.ttf
Normal file
Binary file not shown.
BIN
app/assets/fonts/glyphicons-halflings-regular.woff
Normal file
BIN
app/assets/fonts/glyphicons-halflings-regular.woff
Normal file
Binary file not shown.
BIN
app/assets/fonts/glyphicons-halflings-regular.woff2
Normal file
BIN
app/assets/fonts/glyphicons-halflings-regular.woff2
Normal file
Binary file not shown.
BIN
app/assets/images/avatar-bastian.jpeg
Normal file
BIN
app/assets/images/avatar-bastian.jpeg
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 5.0 KiB |
BIN
app/assets/images/avatar-helge.png
Normal file
BIN
app/assets/images/avatar-helge.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 42 KiB |
BIN
app/assets/images/avatar-philipp.png
Normal file
BIN
app/assets/images/avatar-philipp.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 45 KiB |
BIN
app/assets/images/opensnp-logo.png
Normal file
BIN
app/assets/images/opensnp-logo.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 44 KiB |
Binary file not shown.
|
Before Width: | Height: | Size: 14 KiB After Width: | Height: | Size: 1.1 KiB |
@@ -1,7 +1,6 @@
|
||||
//= require jquery
|
||||
//= require jquery_ujs
|
||||
//= require jquery-ui
|
||||
//= require twitter/bootstrap
|
||||
//= require jquery.ui.all
|
||||
//= require ./dalliance-compiled.js
|
||||
//= require ./jquery.jqplot.min
|
||||
//= require ./jqplot.barRenderer.min.js
|
||||
@@ -11,15 +10,17 @@
|
||||
//= require ./jqplot.pieRenderer.min.js
|
||||
//= require ./jquery.easytabs
|
||||
//= require jquery_nested_form
|
||||
//= require bootstrap.min
|
||||
//= require_self
|
||||
// = require_tree .
|
||||
|
||||
$(document).ready(function() {
|
||||
$(document).ready(function() {
|
||||
$('#update_user').click(function() {
|
||||
$('#update_user').val("Updating...").addClass("disabled");
|
||||
setTimeout(function(){ $('#update_user').val("Update Information").removeClass("disabled");},1000);
|
||||
});
|
||||
|
||||
//$("#PaperMendeley").tablesorter({sortList: [[2,1]]});
|
||||
//$("#PaperMendeley").tablesorter({sortList: [[2,1]]});
|
||||
//$("#PaperPlos").tablesorter({sortList: [[2,1]]});
|
||||
|
||||
$('#remove_help_one').click(function() {
|
||||
|
||||
7
app/assets/javascripts/bootstrap.min.js
vendored
Normal file
7
app/assets/javascripts/bootstrap.min.js
vendored
Normal file
File diff suppressed because one or more lines are too long
79
app/assets/javascripts/script.js
Normal file
79
app/assets/javascripts/script.js
Normal file
@@ -0,0 +1,79 @@
|
||||
(function(window, document) {
|
||||
'use strict';
|
||||
$(document).ready(function() {
|
||||
|
||||
var snpApp = function () {
|
||||
var $searchButton = $('[data-js="search-button"]');
|
||||
var $searchForm = $('[data-js="search-form"]');
|
||||
var $panelHeader = $('[data-js="panel-header"]');
|
||||
var $extendButton = $('[data-js="extend-button"]');
|
||||
var $pictureReplyButton = $('[data-js="picture-reply-button"]');
|
||||
var $snpReplyButton = $('[data-js="snp-reply-button"]');
|
||||
|
||||
var init = function () {
|
||||
$('[data-toggle="tooltip"]').tooltip();
|
||||
initEvent();
|
||||
};
|
||||
|
||||
var initEvent = function () {
|
||||
$searchButton.on('click', searchButtonCallback);
|
||||
$panelHeader.on('click', panelHeaderCallback);
|
||||
$extendButton.on('click', extendButtonCallback);
|
||||
$pictureReplyButton.on('click', pictureReplyButtonCallback);
|
||||
|
||||
$snpReplyButton.on('click', snpReplyButtonCallback);
|
||||
};
|
||||
|
||||
var sendCommentId = function (e, text) {
|
||||
e.value = text + e.value;
|
||||
};
|
||||
|
||||
var searchButtonCallback = function (event) {
|
||||
event.preventDefault();
|
||||
if ($searchForm.hasClass('showed')) {
|
||||
$searchForm.animate({top: '0'});
|
||||
} else {
|
||||
$searchForm.animate({top: '50px'});
|
||||
}
|
||||
$searchForm.toggleClass('showed');
|
||||
};
|
||||
|
||||
var panelHeaderCallback = function (event) {
|
||||
event.preventDefault();
|
||||
if ($(this).siblings('.faq__title-extend').text() === '+') {
|
||||
$(this).siblings('.faq__title-extend').text('-');
|
||||
} else if ($(this).siblings('.faq__title-extend').text() === '-') {
|
||||
$(this).siblings('.faq__title-extend').text('+');
|
||||
}
|
||||
};
|
||||
|
||||
var extendButtonCallback = function (event) {
|
||||
event.preventDefault();
|
||||
if ($(this).text() === '+') {
|
||||
$(this).text('-');
|
||||
} else if ($(this).text() === '-') {
|
||||
$(this).text('+');
|
||||
}
|
||||
};
|
||||
|
||||
var pictureReplyButtonCallback = function (event) {
|
||||
event.preventDefault();
|
||||
sendCommentId(document.new_comment.picture_phenotype_comment_comment_text, '@#' + this.id);
|
||||
return false;
|
||||
};
|
||||
|
||||
var snpReplyButtonCallback = function (event) {
|
||||
event.preventDefault();
|
||||
sendCommentId(document.new_comment.snp_comment_comment_text, '@#' + this.id);
|
||||
return false;
|
||||
};
|
||||
|
||||
return {
|
||||
init: init
|
||||
};
|
||||
|
||||
};
|
||||
|
||||
snpApp().init();
|
||||
});
|
||||
})(window, document);
|
||||
@@ -1,4 +1,11 @@
|
||||
/*
|
||||
*= require_self
|
||||
*= require_tree .
|
||||
*/
|
||||
*= require bootstrap.min
|
||||
*= require_self
|
||||
*= require style
|
||||
*/
|
||||
|
||||
@font-face {
|
||||
font-family: 'Glyphicons Halflings';
|
||||
src: url('/assets/glyphicons-halflings-regular.eot');
|
||||
src: url('/assets/glyphicons-halflings-regular.eot?#iefix') format('embedded-opentype'), url('/assets/glyphicons-halflings-regular.woff') format('woff'), url('/assets/glyphicons-halflings-regular.ttf') format('truetype'), url('/assets/glyphicons-halflings-regular.svg#glyphicons_halflingsregular') format('svg');
|
||||
}
|
||||
|
||||
16
app/assets/stylesheets/application/_base.sass
Normal file
16
app/assets/stylesheets/application/_base.sass
Normal file
@@ -0,0 +1,16 @@
|
||||
.table-cell.vertical-centered
|
||||
vertical-align: middle
|
||||
|
||||
.general__container
|
||||
min-height: 500px
|
||||
margin-top: 40px
|
||||
margin-bottom: 20px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
min-height: 677px
|
||||
margin-top: 20px
|
||||
|
||||
.general__title
|
||||
margin: 0 0 20px 0
|
||||
padding-bottom: 15px
|
||||
border-bottom: 1px solid rgba(#000, 0.3)
|
||||
9
app/assets/stylesheets/application/_variables.sass
Normal file
9
app/assets/stylesheets/application/_variables.sass
Normal file
@@ -0,0 +1,9 @@
|
||||
$screen: "only screen" !default
|
||||
$small-range: 769px
|
||||
$tablet-breakpoint: "#{$screen} and (min-width:#{$small-range})" !default
|
||||
|
||||
$smaller-range: 321px
|
||||
$mobile-breakpoint: "#{$screen} and (min-width:#{$smaller-range})" !default
|
||||
|
||||
$main-color1: #316b94
|
||||
$main-color2: #17415d
|
||||
19
app/assets/stylesheets/application/layout/_achievements.sass
Normal file
19
app/assets/stylesheets/application/layout/_achievements.sass
Normal file
@@ -0,0 +1,19 @@
|
||||
.achievements__image
|
||||
float: left
|
||||
margin-right: 10px
|
||||
margin-top: 10px
|
||||
|
||||
.achievements__title
|
||||
margin-top: 10px
|
||||
|
||||
.achievements__table-title
|
||||
margin-top: 10px
|
||||
margin-bottom: 20px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
margin-bottom: 10px
|
||||
|
||||
|
||||
div.achievements__table
|
||||
margin-top: 50px
|
||||
background-color: #fff
|
||||
34
app/assets/stylesheets/application/layout/_faq.sass
Normal file
34
app/assets/stylesheets/application/layout/_faq.sass
Normal file
@@ -0,0 +1,34 @@
|
||||
.faq__questions-tabs
|
||||
margin-bottom: 10px
|
||||
|
||||
.faq__questions-list
|
||||
margin-top: 20px
|
||||
|
||||
div.faq__single-question-div
|
||||
border-color: $main-color2
|
||||
|
||||
.panel-default div.faq__single-question-panel
|
||||
border-color: $main-color2
|
||||
background-color: $main-color2
|
||||
color: white
|
||||
|
||||
.faq__question-title
|
||||
position: relative
|
||||
|
||||
.faq__title-content
|
||||
width: 95%
|
||||
|
||||
.faq__title-extend
|
||||
position: absolute
|
||||
top: 18%
|
||||
font-size: 20px
|
||||
text-decoration: none
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
position: relative
|
||||
|
||||
.faq__title-extend:hover
|
||||
text-decoration: none
|
||||
|
||||
.faq__title-extend:focus
|
||||
text-decoration: none
|
||||
19
app/assets/stylesheets/application/layout/_fitbit.sass
Normal file
19
app/assets/stylesheets/application/layout/_fitbit.sass
Normal file
@@ -0,0 +1,19 @@
|
||||
.fitbit__download-button
|
||||
width: 175px
|
||||
margin-bottom: 10px
|
||||
|
||||
.fitbit__download-text
|
||||
font-size: 10px
|
||||
|
||||
.fitbit__download-container
|
||||
margin-top: 30px
|
||||
|
||||
.fitbit__table
|
||||
clear: both
|
||||
margin-top: 30px
|
||||
|
||||
.fitbit__form
|
||||
margin: 30px 0
|
||||
|
||||
.fitbit__form-submit-button
|
||||
margin-top: 20px
|
||||
16
app/assets/stylesheets/application/layout/_footer.sass
Normal file
16
app/assets/stylesheets/application/layout/_footer.sass
Normal file
@@ -0,0 +1,16 @@
|
||||
.footer
|
||||
padding-top: 20px
|
||||
background-color: $main-color1
|
||||
color: white
|
||||
|
||||
.footer a
|
||||
color: white
|
||||
|
||||
.footer__links-bottom
|
||||
margin-top: 30px
|
||||
|
||||
.footer__texts
|
||||
font-size: 10pt
|
||||
|
||||
@media #{tablet-breakpoint}
|
||||
font-size: 15pt
|
||||
13
app/assets/stylesheets/application/layout/_genotype.sass
Normal file
13
app/assets/stylesheets/application/layout/_genotype.sass
Normal file
@@ -0,0 +1,13 @@
|
||||
.genotype__download-button
|
||||
width: 175px
|
||||
margin-bottom: 10px
|
||||
|
||||
.genotype__download-text
|
||||
font-size: 10px
|
||||
|
||||
.genotype__download-container
|
||||
margin-top: 30px
|
||||
|
||||
.genotype__table
|
||||
clear: both
|
||||
margin-top: 30px
|
||||
42
app/assets/stylesheets/application/layout/_index.sass
Normal file
42
app/assets/stylesheets/application/layout/_index.sass
Normal file
@@ -0,0 +1,42 @@
|
||||
.index__jumbotron
|
||||
width: 100%
|
||||
position: relative
|
||||
margin-top: 50px
|
||||
text-align: center
|
||||
background-color: $main-color2
|
||||
z-index: 0
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
margin-top: 0
|
||||
text-align: left
|
||||
|
||||
|
||||
.index__jumbotron-title
|
||||
font-size: 43px
|
||||
|
||||
.index__jumbotron-image
|
||||
margin-top: 25px
|
||||
|
||||
.index__jumbotron-container
|
||||
color: white
|
||||
|
||||
.index__jumbotron-buttons
|
||||
padding-bottom: 10px
|
||||
|
||||
a
|
||||
margin-top: 15px
|
||||
|
||||
p.index__jumbotron-paragraph
|
||||
margin-bottom: 20px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
|
||||
.index__about-text-icons
|
||||
font-size: 40px
|
||||
|
||||
.index__about-texts, .index__about-title
|
||||
margin-bottom: 40px
|
||||
|
||||
.index__about-title
|
||||
border-bottom: 1px solid black
|
||||
padding-bottom: 20px
|
||||
27
app/assets/stylesheets/application/layout/_message.sass
Normal file
27
app/assets/stylesheets/application/layout/_message.sass
Normal file
@@ -0,0 +1,27 @@
|
||||
.message__message-informations
|
||||
position: relative
|
||||
margin-bottom: 20px
|
||||
|
||||
.message__message-date
|
||||
position: absolute
|
||||
top: 0px
|
||||
right: 0
|
||||
|
||||
.message__reply-button
|
||||
float: left
|
||||
margin: 0 10px 0 33%
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
margin: 0 10px 0 45%
|
||||
|
||||
.message__delete-button
|
||||
float: left
|
||||
|
||||
div.message__message
|
||||
background-color: #fff
|
||||
|
||||
.message__message-subject
|
||||
margin: 0px 0 20px 0
|
||||
|
||||
.message__message-body
|
||||
font-size: 13pt
|
||||
10
app/assets/stylesheets/application/layout/_modal.sass
Normal file
10
app/assets/stylesheets/application/layout/_modal.sass
Normal file
@@ -0,0 +1,10 @@
|
||||
.modal__text
|
||||
color: #fff
|
||||
white-space: normal
|
||||
opacity: 1
|
||||
|
||||
.radio.modal__radio, .modal__input-text
|
||||
margin-bottom: 10px
|
||||
|
||||
.modal__save-button
|
||||
margin-top: 10px
|
||||
@@ -0,0 +1,6 @@
|
||||
.new-genotype__form
|
||||
background-color: #fff
|
||||
|
||||
.new-genotype__disclaimer
|
||||
height: 438px
|
||||
overflow: auto
|
||||
@@ -0,0 +1,7 @@
|
||||
.new-message__select-input
|
||||
width: 220px
|
||||
height: 25px
|
||||
background-color: #fff
|
||||
|
||||
div.new-message__received-message
|
||||
background-color: #fff
|
||||
@@ -0,0 +1,7 @@
|
||||
input.password-reset__submit-button
|
||||
margin-top: 20px
|
||||
background-color: $main-color1
|
||||
transition: background-color 0.7s
|
||||
|
||||
input.password-reset__submit-button:hover
|
||||
background-color: $main-color2
|
||||
41
app/assets/stylesheets/application/layout/_phenotype.sass
Normal file
41
app/assets/stylesheets/application/layout/_phenotype.sass
Normal file
@@ -0,0 +1,41 @@
|
||||
.phenotype__add-button
|
||||
margin: 20px 0
|
||||
|
||||
.phenotype__side-menu
|
||||
margin: 50px 0 -10px 30%
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
margin: 20px 0 0 20px
|
||||
|
||||
form.phenotype__new-form
|
||||
padding: 30px 20px
|
||||
background-color: #fff
|
||||
|
||||
div.phenotype__download-area
|
||||
background-color: #fff
|
||||
|
||||
.phenotype__upload-date
|
||||
font-size: 15pt
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
font-size: 13pt
|
||||
|
||||
a.phenotype__download-button
|
||||
margin-top: 20px
|
||||
background-color: $main-color1
|
||||
transition: background-color 0.7s
|
||||
|
||||
a.phenotype__download-button:hover
|
||||
background-color: $main-color2
|
||||
|
||||
.phenotype__add-phenotype-text
|
||||
margin-bottom: 20px
|
||||
|
||||
.phenotype__add-phenotype-form
|
||||
margin-bottom: 20px
|
||||
|
||||
div.phenotype__add-phenotype-form-options:last-of-type
|
||||
margin-bottom: 20px
|
||||
|
||||
div.phenotype__variation-form
|
||||
background-color: #fff
|
||||
@@ -0,0 +1,21 @@
|
||||
.pictures-phenotype__add-button
|
||||
margin: 20px 0
|
||||
|
||||
form.picture-phenotype__new-form
|
||||
padding: 30px 20px
|
||||
background-color: #fff
|
||||
|
||||
.picture-phenotype__buttons
|
||||
margin: 20px 0
|
||||
|
||||
.picture-phenotype__upload-div
|
||||
margin: 20px 0
|
||||
|
||||
.picture-phenotype__submit-button
|
||||
margin: 20px 0 30px
|
||||
|
||||
.pictures-phenotype__picture-div
|
||||
margin: 10px 0
|
||||
|
||||
.pictures-phenotype__change-pic-div
|
||||
margin: 10px 0
|
||||
5
app/assets/stylesheets/application/layout/_search.sass
Normal file
5
app/assets/stylesheets/application/layout/_search.sass
Normal file
@@ -0,0 +1,5 @@
|
||||
.search__user-cell
|
||||
width: 150px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 25%
|
||||
62
app/assets/stylesheets/application/layout/_settings.sass
Normal file
62
app/assets/stylesheets/application/layout/_settings.sass
Normal file
@@ -0,0 +1,62 @@
|
||||
.settings__general-change-password
|
||||
margin-top: 50px
|
||||
margin-bottom: 30px
|
||||
|
||||
.settings__general-username-div
|
||||
@media #{$tablet-breakpoint}
|
||||
margin-left: 10%
|
||||
|
||||
.settings__general-change-picutre-text
|
||||
margin: 10px 0
|
||||
|
||||
.settings__general-add-genotype
|
||||
margin-top: 40px
|
||||
width: 175px
|
||||
|
||||
input.settings__confirm-changes
|
||||
margin-bottom: 20px
|
||||
border-color: $main-color1
|
||||
background-color: $main-color1
|
||||
transition: background-color .7s, border-color .7s
|
||||
|
||||
input.settings__confirm-changes:hover
|
||||
border-color: darken($main-color1, 20)
|
||||
background-color: darken($main-color1, 20)
|
||||
|
||||
.settings__phenotypes-select-input
|
||||
width: 220px
|
||||
height: 25px
|
||||
background-color: #fff
|
||||
|
||||
.settings__phenotypes-options-sex,
|
||||
.settings__phenotypes-options-birth
|
||||
margin-bottom: 30px
|
||||
|
||||
.settings__additional-phenotypes
|
||||
clear: both
|
||||
margin-top: 30px
|
||||
|
||||
.settings__single-additional-phenotypes
|
||||
margin-top: 10px
|
||||
padding-bottom: 20px
|
||||
border-bottom: 1px solid rgba(#000, 0.3)
|
||||
|
||||
.settings__additional-phenotypes-remove
|
||||
margin-top: 10px
|
||||
|
||||
.settings__add-phenotype-button
|
||||
width: 175px
|
||||
margin-top: 40px
|
||||
margin-bottom: 20px
|
||||
|
||||
.settings__notifications-options
|
||||
margin-top: 30px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 50%
|
||||
|
||||
.settings__deleting-button
|
||||
margin: 5px 0px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
margin: 5px 20px
|
||||
12
app/assets/stylesheets/application/layout/_signup.sass
Normal file
12
app/assets/stylesheets/application/layout/_signup.sass
Normal file
@@ -0,0 +1,12 @@
|
||||
.signup__form
|
||||
background-color: #fff
|
||||
|
||||
.signup__disclaimer
|
||||
height: 570px
|
||||
overflow: auto
|
||||
|
||||
.signup__recaptcha
|
||||
margin: 20px 0
|
||||
|
||||
.signup__advise
|
||||
margin: 20px 0 0 0
|
||||
20
app/assets/stylesheets/application/layout/_snps.sass
Normal file
20
app/assets/stylesheets/application/layout/_snps.sass
Normal file
@@ -0,0 +1,20 @@
|
||||
.snps__download-button
|
||||
width: 175px
|
||||
margin-bottom: 10px
|
||||
|
||||
.snps__download-text
|
||||
font-size: 10px
|
||||
|
||||
.snps__download-container
|
||||
margin-top: 30px
|
||||
|
||||
.snps__table
|
||||
clear: both
|
||||
margin-top: 30px
|
||||
|
||||
.snps__container .snps__genome-browser
|
||||
padding-bottom: 50px
|
||||
background-color: #fff
|
||||
|
||||
.snps__graphs
|
||||
margin-bottom: 30px
|
||||
22
app/assets/stylesheets/application/layout/_stats.sass
Normal file
22
app/assets/stylesheets/application/layout/_stats.sass
Normal file
@@ -0,0 +1,22 @@
|
||||
.statistic__list-item
|
||||
margin-bottom: 20px
|
||||
|
||||
.statistic__list-item-button
|
||||
margin-left: 34%
|
||||
margin-top: 20px
|
||||
border-color: $main-color1
|
||||
background-color: $main-color1
|
||||
transition: background-color .5s, border-color .5s
|
||||
|
||||
.statistic__list-item-button:hover
|
||||
border-color: darken($main-color1, 20)
|
||||
background-color: darken($main-color1, 20)
|
||||
|
||||
.statistic__images
|
||||
width: 275px
|
||||
|
||||
@media #{$mobile-breakpoint}
|
||||
width: 300px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 400px
|
||||
7
app/assets/stylesheets/application/layout/_updates.sass
Normal file
7
app/assets/stylesheets/application/layout/_updates.sass
Normal file
@@ -0,0 +1,7 @@
|
||||
.updates__tab-title
|
||||
margin: 30px 0
|
||||
|
||||
.updates__tab-button
|
||||
width: 175px
|
||||
margin-top: 20px
|
||||
margin-bottom: 20px
|
||||
62
app/assets/stylesheets/application/layout/_userpage.sass
Normal file
62
app/assets/stylesheets/application/layout/_userpage.sass
Normal file
@@ -0,0 +1,62 @@
|
||||
.userpage__profile-picture
|
||||
width: 125px
|
||||
margin: 0px 20px 0px 0px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 170px
|
||||
margin: 25px 20px 10px 10px
|
||||
|
||||
.userpage__description
|
||||
font-size: 15pt
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
font-size: 12pt
|
||||
|
||||
.userpage__new-messages
|
||||
margin-top: 10px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
position: absolute
|
||||
bottom: 10px
|
||||
left: 215px
|
||||
margin-top: 0
|
||||
|
||||
.userpage__profile-informations
|
||||
position: relative
|
||||
margin-bottom: 20px
|
||||
|
||||
.userpage__phenotype-button
|
||||
margin: 10px 0
|
||||
|
||||
.userpage__received-title, .userpage__sent-title
|
||||
margin: 20px 0
|
||||
padding-bottom: 10px
|
||||
border-bottom: 1px solid rgba(#000, 0.2)
|
||||
|
||||
.userpage__no-messages
|
||||
margin: 30px 0
|
||||
|
||||
.userpage__user-cell
|
||||
width: 150px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 25%
|
||||
|
||||
.userpage__subject-cell
|
||||
width: 300px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 60%
|
||||
|
||||
.userpage__status-cell
|
||||
width: 100px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 15%
|
||||
|
||||
.userpage__help-text-icons
|
||||
font-size: 40px
|
||||
color: #000
|
||||
|
||||
.userpage__help-block
|
||||
margin-top: 30px
|
||||
49
app/assets/stylesheets/application/modules/_comments.sass
Normal file
49
app/assets/stylesheets/application/modules/_comments.sass
Normal file
@@ -0,0 +1,49 @@
|
||||
.comments__single-comment
|
||||
margin-bottom: 10px
|
||||
padding: 15px 10px
|
||||
border: 1px solid #e3e3e3
|
||||
border-radius: 3px
|
||||
|
||||
.comments__comment-photo-div
|
||||
margin-right: 20px
|
||||
margin-top: 10px
|
||||
|
||||
.comments__comment-photo
|
||||
width: 60px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 90px
|
||||
|
||||
.comments__comment-text-div
|
||||
position: relative
|
||||
padding-top: 5px
|
||||
|
||||
.comments__comment-text
|
||||
margin-top: 25px
|
||||
margin-bottom: 15px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
margin-top: 0
|
||||
margin-bottom: 10px
|
||||
|
||||
.comments__comment-username
|
||||
margin-bottom: 5px
|
||||
font-size: 12pt
|
||||
|
||||
.comments__comment-subject
|
||||
font-weight: bold
|
||||
|
||||
.comments__comment-date
|
||||
position: absolute
|
||||
top: 0
|
||||
right: 0
|
||||
|
||||
.comments__comment-reply-button
|
||||
@media #{$tablet-breakpoint}
|
||||
position: absolute
|
||||
bottom: 0
|
||||
right: 0
|
||||
|
||||
div.comments__comment-box
|
||||
margin-top: 20px
|
||||
background-color: #fff
|
||||
61
app/assets/stylesheets/application/modules/_navbar.sass
Normal file
61
app/assets/stylesheets/application/modules/_navbar.sass
Normal file
@@ -0,0 +1,61 @@
|
||||
.navbar-menu
|
||||
position: relative
|
||||
margin-bottom: 0
|
||||
background-color: $main-color1
|
||||
border-color: $main-color1
|
||||
z-index: 2
|
||||
|
||||
.container .navbar-header a.navbar-menu__brand
|
||||
color: white
|
||||
|
||||
.container ul li a.navbar-menu__options,
|
||||
.nav .dropdown .dropdown-menu li a.navbar-menu__options
|
||||
color: white
|
||||
transition: background-color .7s
|
||||
|
||||
.navbar-default .container ul li a.navbar-menu__options:hover,
|
||||
.navbar-default .container ul li a.navbar-menu__options:active,
|
||||
.nav .dropdown .dropdown-menu li a.navbar-menu__options:hover,
|
||||
.nav .dropdown .dropdown-menu li a.navbar-menu__options:active
|
||||
background-color: #6292b5
|
||||
color: white
|
||||
|
||||
.navbar-default .container ul li a.navbar-menu__options:focus,
|
||||
.nav .dropdown .dropdown-menu li a.navbar-menu__options:focus
|
||||
color: white
|
||||
background-color: $main-color1
|
||||
|
||||
li a.navbar-menu__profile-option
|
||||
padding: 9px
|
||||
|
||||
.navbar-menu__search-input
|
||||
width: 150px
|
||||
position: absolute
|
||||
top: 0px
|
||||
left: 30%
|
||||
margin: 0
|
||||
|
||||
@media #{$mobile-breakpoint}
|
||||
width: 180px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 220px
|
||||
left: 0
|
||||
margin-left: 69%
|
||||
|
||||
.navbar-menu__search-input-content
|
||||
box-shadow: 0 6px 12px rgba(0, 0, 0, .175)
|
||||
z-index: 2
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
z-index: 1
|
||||
|
||||
.navbar-menu__info-menu, .navbar-menu__profile-menu
|
||||
background-color: $main-color1
|
||||
|
||||
.container .navbar-header .navbar-menu__hamburger-menu:hover,
|
||||
.container .navbar-header .navbar-menu__hamburger-menu:focus
|
||||
background-color: $main-color1
|
||||
|
||||
.navbar-header .navbar-menu__hamburger-menu .navbar-menu__hamburger-menu-icon
|
||||
background-color: #fff
|
||||
15
app/assets/stylesheets/application/modules/_news_list.sass
Normal file
15
app/assets/stylesheets/application/modules/_news_list.sass
Normal file
@@ -0,0 +1,15 @@
|
||||
.news__single-news
|
||||
position: relative
|
||||
padding-bottom: 20px
|
||||
border-bottom: 1px solid black
|
||||
|
||||
.news__single-news-title
|
||||
margin-bottom: 20px
|
||||
|
||||
.news__single-news-date
|
||||
position: absolute
|
||||
bottom: 0
|
||||
right: 0
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
top: 0
|
||||
23
app/assets/stylesheets/application/modules/_simple-form.sass
Normal file
23
app/assets/stylesheets/application/modules/_simple-form.sass
Normal file
@@ -0,0 +1,23 @@
|
||||
.simple-form__container
|
||||
min-height: 500px
|
||||
margin-top: 40px
|
||||
margin-bottom: 20px
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
min-height: 600px
|
||||
margin-top: 100px
|
||||
|
||||
.simple-form__title
|
||||
text-align: center
|
||||
|
||||
.simple-form__form
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 50%
|
||||
margin-top: 20px
|
||||
|
||||
.simple-form__links
|
||||
margin-top: 10px
|
||||
|
||||
li
|
||||
margin-top: 10px
|
||||
6
app/assets/stylesheets/application/modules/_tabs.sass
Normal file
6
app/assets/stylesheets/application/modules/_tabs.sass
Normal file
@@ -0,0 +1,6 @@
|
||||
.tabs__one-tab
|
||||
margin-bottom: 20px
|
||||
background-color: #fff
|
||||
|
||||
.tabs__one-tab-title
|
||||
margin-bottom: 40px
|
||||
23
app/assets/stylesheets/application/modules/_warnings.sass
Normal file
23
app/assets/stylesheets/application/modules/_warnings.sass
Normal file
@@ -0,0 +1,23 @@
|
||||
.warnings_container
|
||||
width: 100%
|
||||
position: absolute
|
||||
z-index: 4
|
||||
|
||||
.warning__alert
|
||||
width: 200px
|
||||
margin-bottom: 0
|
||||
|
||||
@media #{$tablet-breakpoint}
|
||||
width: 500px
|
||||
|
||||
.warning__alert.alert.alert-danger
|
||||
border-color: rgba(#f2dede , 0.5)
|
||||
background-color: rgba(#f2dede , 0.5)
|
||||
|
||||
.warning__alert.alert.alert-success
|
||||
border-color: rgba(#dff0d8, 0.5)
|
||||
background-color: rgba(#dff0d8, 0.5)
|
||||
|
||||
.warning__alert.alert.alert-info
|
||||
border-color: rgba(#d9edf7, 0.5)
|
||||
background-color: rgba(#d9edf7, 0.5)
|
||||
6
app/assets/stylesheets/bootstrap.min.css
vendored
Normal file
6
app/assets/stylesheets/bootstrap.min.css
vendored
Normal file
File diff suppressed because one or more lines are too long
@@ -1,3 +0,0 @@
|
||||
.hidden {
|
||||
display: none;
|
||||
}
|
||||
5
app/assets/stylesheets/style.sass
Normal file
5
app/assets/stylesheets/style.sass
Normal file
@@ -0,0 +1,5 @@
|
||||
@import "./application/variables"
|
||||
@import "./application/base"
|
||||
@import "./application/layout/*"
|
||||
@import "./application/modules/*"
|
||||
// @import "./application/helpers/*"
|
||||
@@ -4,11 +4,11 @@ class AchievementsController < ApplicationController
|
||||
def show
|
||||
@achievement = Achievement.find(params[:id])
|
||||
|
||||
@title = "Achievements"
|
||||
@title = 'Achievements'
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml
|
||||
end
|
||||
end
|
||||
|
||||
end
|
||||
end
|
||||
|
||||
@@ -5,7 +5,7 @@ class ApplicationController < ActionController::Base
|
||||
helper_method :current_user_session, :current_user
|
||||
|
||||
def not_found
|
||||
raise ActionController::RoutingError.new("Not found")
|
||||
raise ActionController::RoutingError.new('Not found')
|
||||
end
|
||||
|
||||
private
|
||||
@@ -23,7 +23,7 @@ class ApplicationController < ActionController::Base
|
||||
def require_user
|
||||
unless current_user
|
||||
store_location
|
||||
flash[:warning] = "You must be logged in to access this page!"
|
||||
flash[:warning] = 'You must be logged in to access this page'
|
||||
redirect_to root_url
|
||||
return false
|
||||
end
|
||||
@@ -32,7 +32,7 @@ class ApplicationController < ActionController::Base
|
||||
def require_no_user
|
||||
if current_user
|
||||
store_location
|
||||
flash[:warning] = "You must be logged out to access this page"
|
||||
flash[:warning] = 'You must be logged out to access this page'
|
||||
redirect_to current_user
|
||||
return false
|
||||
end
|
||||
|
||||
@@ -16,15 +16,15 @@ class BeaconController < ApplicationController
|
||||
@snps = Snp.where(position: @position, chromosome: @chromosome)
|
||||
@snps.each do |s|
|
||||
if s.allele_frequency[@allele] > 0
|
||||
render :text => 'YES' and return
|
||||
render text: 'YES' and return
|
||||
break
|
||||
end
|
||||
end
|
||||
# not found? return no
|
||||
render :text => 'NO' and return
|
||||
render text: 'NO' and return
|
||||
rescue
|
||||
# did something break: return none (not useful, but the API standard…)
|
||||
render :text => 'NONE'
|
||||
render text: 'NONE'
|
||||
end
|
||||
end
|
||||
end
|
||||
|
||||
@@ -10,7 +10,7 @@ class DasController < ApplicationController
|
||||
@positions = []
|
||||
@id = []
|
||||
@unkown_chromosome = []
|
||||
@known_chromosomes = ("1".."22").to_a << "X" << "MT" << "Y"
|
||||
@known_chromosomes = ('1'..'22').to_a << 'X' << 'MT' << 'Y'
|
||||
# user_snps is an array of arrays, each inner array having all user_snps from one specified segment
|
||||
@user_snps = []
|
||||
@has_start = []
|
||||
@@ -21,13 +21,13 @@ class DasController < ApplicationController
|
||||
if request.query_string
|
||||
@query_string = CGI.parse request.query_string
|
||||
@types = []
|
||||
|
||||
@query_string["type"].each do |t|
|
||||
|
||||
@query_string['type'].each do |t|
|
||||
@types << t
|
||||
end
|
||||
|
||||
@query_string["segment"].each do |q|
|
||||
@pos = q.split(":")
|
||||
|
||||
@query_string['segment'].each do |q|
|
||||
@pos = q.split(':')
|
||||
# append chromosome-id to the array of ids
|
||||
@id << @pos[0]
|
||||
if @known_chromosomes.include? @pos[0]
|
||||
@@ -37,9 +37,9 @@ class DasController < ApplicationController
|
||||
end
|
||||
|
||||
if @pos[1] != nil
|
||||
@start_and_end << @pos[1].split(",")
|
||||
@start = @pos[1].split(",")[0]
|
||||
@end = @pos[1].split(",")[1]
|
||||
@start_and_end << @pos[1].split(',')
|
||||
@start = @pos[1].split(',')[0]
|
||||
@end = @pos[1].split(',')[1]
|
||||
@has_start << true
|
||||
@snps = @user.snps.where('CAST(position as integer) <= ? AND CAST(position as integer) >= ? AND CAST(chromosome as text) = ?', @end, @start, @pos[0])
|
||||
@tmp_user_snps = []
|
||||
@@ -60,7 +60,7 @@ class DasController < ApplicationController
|
||||
# there are no positions, so use only chromosome
|
||||
@snps = @user.snps.where('CAST(chromosome as text) = ?', @id)
|
||||
@tmp_user_snps = []
|
||||
|
||||
|
||||
@snps.each do |s|
|
||||
# there is only one user_snp for each snps
|
||||
if @types != []
|
||||
@@ -72,53 +72,51 @@ class DasController < ApplicationController
|
||||
@tmp_user_snps << s.user_snps.find_by_genotype_id(@genotype.id)
|
||||
end
|
||||
end
|
||||
|
||||
@user_snps << @tmp_user_snps
|
||||
|
||||
@user_snps << @tmp_user_snps
|
||||
@has_start << false
|
||||
end
|
||||
end
|
||||
# When everything went correctly, send back 200
|
||||
response.headers["X-DAS-Status"] = "200"
|
||||
response.headers['X-DAS-Status'] = '200'
|
||||
else
|
||||
# no chromosome or start/end, so get nothing
|
||||
@user_snps = [] #@user.user_snps
|
||||
@id = ""
|
||||
@start = ""
|
||||
@end = ""
|
||||
@id = ''
|
||||
@start = ''
|
||||
@end = ''
|
||||
|
||||
# Bad command arguments (arguments invalid)
|
||||
response.headers["X-DAS-Status"] = "402"
|
||||
response.headers['X-DAS-Status'] = '402'
|
||||
end
|
||||
response.headers["X-DAS-Version"] = "DAS/1.53E"
|
||||
response.headers['X-DAS-Version'] = 'DAS/1.53E'
|
||||
# Change these capabilities once we implement more
|
||||
response.headers["X-DAS-Capabilities"] = "features/1.1; sources/1.0"
|
||||
response.headers['X-DAS-Capabilities'] = 'features/1.1; sources/1.0'
|
||||
# Put in the servername and version
|
||||
response.headers["X-DAS-Server"] = request.env["SERVER_SOFTWARE"].split(" ")[0]
|
||||
response.headers["Access-Control-Allow-Origin"] = "*"
|
||||
response.headers['X-DAS-Server'] = request.env['SERVER_SOFTWARE'].split(' ')[0]
|
||||
response.headers['Access-Control-Allow-Origin'] = '*'
|
||||
|
||||
render :template => 'das/show.xml.erb', :layout => false
|
||||
render template: 'das/show.xml.erb', layout: false
|
||||
end
|
||||
|
||||
def sources
|
||||
@users = User.all
|
||||
response.headers["X-DAS-Version"] = "DAS/1.53E"
|
||||
response.headers["X-DAS-Status"] = "200"
|
||||
response.headers["X-DAS-Capabilities"] = "features/1.1; sources/1.0"
|
||||
response.headers['X-DAS-Version'] = 'DAS/1.53E'
|
||||
response.headers['X-DAS-Status'] = '200'
|
||||
response.headers['X-DAS-Capabilities'] = 'features/1.1; sources/1.0'
|
||||
|
||||
response.headers["X-DAS-Server"] = request.env["SERVER_SOFTWARE"].split(" ")[0]
|
||||
|
||||
render :template => 'das/sources.xml.erb', :layout => false
|
||||
response.headers['X-DAS-Server'] = request.env['SERVER_SOFTWARE'].split(' ')[0]
|
||||
|
||||
render template: 'das/sources.xml.erb', layout: false
|
||||
end
|
||||
|
||||
|
||||
def startpoint
|
||||
@user = User.find_by_id(params[:id])
|
||||
response.headers["X-DAS-Version"] = "DAS/1.53E"
|
||||
response.headers["X-DAS-Status"] = "200"
|
||||
response.headers["X-DAS-Capabilities"] = "features/1.1; sources/1.0"
|
||||
response.headers["X-DAS-Server"] = request.env["SERVER_SOFTWARE"].split(" ")[0]
|
||||
|
||||
render :template => 'das/startpoint.xhtml.erb', :layout => false
|
||||
response.headers['X-DAS-Version'] = 'DAS/1.53E'
|
||||
response.headers['X-DAS-Status'] = '200'
|
||||
response.headers['X-DAS-Capabilities'] = 'features/1.1; sources/1.0'
|
||||
response.headers['X-DAS-Server'] = request.env['SERVER_SOFTWARE'].split(' ')[0]
|
||||
|
||||
render template: 'das/startpoint.xhtml.erb', layout: false
|
||||
end
|
||||
end
|
||||
|
||||
|
||||
|
||||
@@ -2,20 +2,20 @@
|
||||
class FitbitProfilesController < ApplicationController
|
||||
before_filter :require_user, except: [:new_notification, :show, :index]
|
||||
before_filter :require_user, only: [:update,:destroy,:init,:edit,:start_auth,:verify_auth,:dump]
|
||||
protect_from_forgery :except => :new_notification
|
||||
protect_from_forgery except: :new_notification
|
||||
helper_method :sort_column, :sort_direction
|
||||
|
||||
def index
|
||||
@title = "Listing all connected Fitbit accounts"
|
||||
@title = 'Listing all connected Fitbit accounts'
|
||||
@fitbit_profiles = FitbitProfile
|
||||
.includes(:user)
|
||||
.order("#{sort_column} #{sort_direction}")
|
||||
.paginate(page: params[:page], per_page: 20)
|
||||
.paginate(page: params[:page], per_page: 15)
|
||||
end
|
||||
|
||||
def show
|
||||
@fitbit_profile = FitbitProfile.find_by_id(params[:id]) || not_found
|
||||
@title = "Fitbit profile"
|
||||
@title = 'Fitbit profile'
|
||||
|
||||
#grab activity measures for graphs
|
||||
if @fitbit_profile.activities
|
||||
@@ -146,12 +146,12 @@ class FitbitProfilesController < ApplicationController
|
||||
|
||||
def update
|
||||
@fitbit_profile = FitbitProfile.find_by_id(params[:fitbit_profile][:id])
|
||||
@fitbit_profile.body = params[:fitbit_profile]["body"]
|
||||
@fitbit_profile.activities = params[:fitbit_profile]["activities"]
|
||||
@fitbit_profile.sleep = params[:fitbit_profile]["sleep"]
|
||||
@fitbit_profile.body = params[:fitbit_profile]['body']
|
||||
@fitbit_profile.activities = params[:fitbit_profile]['activities']
|
||||
@fitbit_profile.sleep = params[:fitbit_profile]['sleep']
|
||||
@fitbit_profile.save
|
||||
FitbitEdit.perform_async(@fitbit_profile.id)
|
||||
redirect_to "/fitbit/edit"
|
||||
redirect_to '/fitbit/edit'
|
||||
end
|
||||
|
||||
def start_auth
|
||||
@@ -182,33 +182,33 @@ class FitbitProfilesController < ApplicationController
|
||||
secret = @fitbit_profile.request_secret
|
||||
verifier = params[:oauth_verifier]
|
||||
begin
|
||||
access_token = @client.authorize(token, secret, { :oauth_verifier => verifier })
|
||||
access_token = @client.authorize(token, secret, { oauth_verifier: verifier })
|
||||
rescue
|
||||
flash[:warning] = "Something went wrong while authenticating your FitBit-Account. Please try again."
|
||||
redirect_to :action => "info"
|
||||
flash[:warning] = 'Something went wrong while authenticating your FitBit-Account. Please try again'
|
||||
redirect_to action: 'info'
|
||||
end
|
||||
@fitbit_profile.access_token = access_token.token
|
||||
@fitbit_profile.access_secret = access_token.secret
|
||||
@fitbit_profile.verifier = verifier
|
||||
@fitbit_profile.save
|
||||
FitbitInit.perform_async(@fitbit_profile.id)
|
||||
flash[:notice] = "Successful login with FitBit!"
|
||||
redirect_to :action => "init"
|
||||
flash[:notice] = 'Successful login with FitBit'
|
||||
redirect_to action: 'init'
|
||||
else
|
||||
flash[:warning] = "Something went wrong while authenticating your FitBit-Account. Please try again."
|
||||
redirect_to :action => "info"
|
||||
flash[:warning] = 'Something went wrong while authenticating your FitBit-Account. Please try again'
|
||||
redirect_to action: 'info'
|
||||
end
|
||||
end
|
||||
|
||||
def new_notification
|
||||
puts params
|
||||
@json_object = params["updates"]
|
||||
@json_object = params['updates']
|
||||
@json_unparsed = @json_object.read
|
||||
@notification = JSON.parse(@json_unparsed)
|
||||
puts @notification[0]
|
||||
puts @notification[0]["collectionType"]
|
||||
puts @notification[0]['collectionType']
|
||||
FitbitNotification.perform_async(@notification)
|
||||
render :nothing => true, :status => 204
|
||||
render nothing: true, status: 204
|
||||
end
|
||||
|
||||
private
|
||||
@@ -219,19 +219,19 @@ class FitbitProfilesController < ApplicationController
|
||||
if current_user
|
||||
return true
|
||||
else
|
||||
flash[:notice] = "You need to be logged in"
|
||||
redirect_to "/signin"
|
||||
flash[:notice] = 'You need to be logged in'
|
||||
redirect_to '/signin'
|
||||
end
|
||||
return false
|
||||
end
|
||||
end
|
||||
|
||||
def sort_column
|
||||
Genotype.column_names.include?(params[:sort]) ? params[:sort] : "created_at"
|
||||
Genotype.column_names.include?(params[:sort]) ? params[:sort] : 'created_at'
|
||||
end
|
||||
|
||||
def sort_direction
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : "desc"
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : 'desc'
|
||||
end
|
||||
|
||||
end
|
||||
|
||||
@@ -15,7 +15,7 @@ class GenotypesController < ApplicationController
|
||||
|
||||
def new
|
||||
@genotype = Genotype.new
|
||||
@title = "Add Genotype-File"
|
||||
@title = 'Add Genotype-File'
|
||||
end
|
||||
|
||||
def create
|
||||
@@ -24,12 +24,12 @@ class GenotypesController < ApplicationController
|
||||
if @genotype.valid? && @genotype.save
|
||||
Preparsing.perform_async(@genotype.id)
|
||||
# award for genotyping-upload
|
||||
@award = Achievement.find_by_award("Published genotyping")
|
||||
@award = Achievement.find_by_award('Published genotyping')
|
||||
user_achievement_attrs = { achievement_id: @award.id,
|
||||
user_id: current_user.id }
|
||||
if UserAchievement.where(user_achievement_attrs).count.zero?
|
||||
UserAchievement.create(user_achievement_attrs)
|
||||
flash[:achievement] = "Congratulations! You've unlocked an achievement:" +
|
||||
flash[:achievement] = 'Congratulations! You\'ve unlocked an achievement:' +
|
||||
" <a href=\"#{url_for(@award)}\">#{@award.award}</a>"
|
||||
end
|
||||
|
||||
@@ -38,37 +38,37 @@ class GenotypesController < ApplicationController
|
||||
end
|
||||
redirect_to(current_user, notice: 'Genotype was successfully uploaded! Parsing and annotating might take a couple of <strike>hours</strike> days.')
|
||||
else
|
||||
render :action => "new"
|
||||
render action: 'new'
|
||||
end
|
||||
end
|
||||
|
||||
def show
|
||||
@genotype = Genotype.find(params[:id])
|
||||
@user = @genotype.user
|
||||
@title = "Genotypes"
|
||||
@title = 'Genotypes'
|
||||
end
|
||||
|
||||
def feed
|
||||
# for rss-feeds
|
||||
@genotypes = Genotype.order('created_at DESC').limit(20)
|
||||
render :action => "rss", :layout => false
|
||||
render action: 'rss', layout: false
|
||||
end
|
||||
|
||||
def destroy
|
||||
genotype = current_user.genotypes.find(params[:id])
|
||||
DeleteGenotype.perform_async(genotype_id: genotype.id)
|
||||
flash[:notice] = 'Your Genotyping will be deleted. This may take a few minutes.'
|
||||
flash[:notice] = 'Your Genotyping will be deleted. This may take a few minutes...'
|
||||
redirect_to current_user
|
||||
end
|
||||
|
||||
private
|
||||
private
|
||||
|
||||
def sort_column
|
||||
Genotype.column_names.include?(params[:sort]) ? params[:sort] : "created_at"
|
||||
Genotype.column_names.include?(params[:sort]) ? params[:sort] : 'created_at'
|
||||
end
|
||||
|
||||
def sort_direction
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : "desc"
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : 'desc'
|
||||
end
|
||||
|
||||
def genotype_params
|
||||
|
||||
@@ -20,7 +20,7 @@ class MessagesController < ApplicationController
|
||||
@message = Message.new(message_params)
|
||||
|
||||
if @message.save && @message.send_message(@message.from_id, @message.to_id)
|
||||
flash[:notice] = 'Message sent!'
|
||||
flash[:notice] = 'Message sent'
|
||||
redirect_to "/users/#{current_user.id}#messages"
|
||||
else
|
||||
render action: 'new'
|
||||
@@ -47,7 +47,7 @@ class MessagesController < ApplicationController
|
||||
message = Message.where(from_id: current_user.id, id: params[:id]).first
|
||||
if message
|
||||
message.destroy
|
||||
flash[:notice] = 'Message deleted.'
|
||||
flash[:notice] = 'Message deleted'
|
||||
redirect_to '/users/' + current_user.id.to_s + '#messages'
|
||||
else
|
||||
render text: 'Unauthorized', status: :unauthorized
|
||||
|
||||
@@ -2,24 +2,9 @@
|
||||
class NewsController < ApplicationController
|
||||
|
||||
def index
|
||||
@title = "News"
|
||||
@new_genotypes = Genotype.order('created_at DESC').limit(20)
|
||||
@new_users = User.order('created_at DESC').limit(20)
|
||||
@new_phenotypes = Phenotype.order('created_at DESC').limit(20)
|
||||
@new_phenotype_comments = PhenotypeComment.order('created_at DESC').limit(20)
|
||||
@new_snp_comments = SnpComment.order('created_at DESC').limit(20)
|
||||
|
||||
@newest_plos_paper = PlosPaper.order('created_at DESC').limit(20)
|
||||
@newest_mendeley_paper = MendeleyPaper.order('created_at DESC').limit(20)
|
||||
|
||||
@newest_paper = @newest_mendeley_paper | @newest_plos_paper
|
||||
@newest_paper.sort! { |a,b| b.created_at <=> a.created_at }
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
end
|
||||
end
|
||||
|
||||
|
||||
def paper_rss
|
||||
@newest_plos_paper = PlosPaper.order('created_at DESC').limit(20)
|
||||
@newest_mendeley_paper = MendeleyPaper.order('created_at DESC').limit(20)
|
||||
@@ -27,7 +12,7 @@ class NewsController < ApplicationController
|
||||
@newest_paper = @newest_mendeley_paper | @newest_plos_paper
|
||||
@newest_paper.sort! { |a,b| b.created_at <=> a.created_at }
|
||||
|
||||
render :action => "paper_rss", :layout => false
|
||||
render action: 'paper_rss', layout: false
|
||||
end
|
||||
|
||||
end
|
||||
|
||||
@@ -1,16 +1,16 @@
|
||||
# frozen_string_literal: true
|
||||
class PasswordResetsController < ApplicationController
|
||||
|
||||
before_filter :load_user_using_perishable_token, :only => [:edit, :update]
|
||||
before_filter :load_user_using_perishable_token, only: [:edit, :update]
|
||||
before_filter :require_no_user
|
||||
|
||||
def new
|
||||
@title = "password reset"
|
||||
@title = 'password reset'
|
||||
render
|
||||
end
|
||||
|
||||
def edit
|
||||
@title = "editing your password"
|
||||
@title = 'editing your password'
|
||||
render
|
||||
end
|
||||
|
||||
@@ -18,10 +18,10 @@ class PasswordResetsController < ApplicationController
|
||||
@user.password = params[:user][:password]
|
||||
@user.password_confirmation = params[:user][:password_confirmation]
|
||||
if @user.save
|
||||
flash[:notice] = "Password successfully updated"
|
||||
redirect_to "/"
|
||||
flash[:notice] = 'Password successfully updated'
|
||||
redirect_to '/'
|
||||
else
|
||||
render :action => :edit
|
||||
render action: :edit
|
||||
end
|
||||
end
|
||||
|
||||
@@ -29,11 +29,11 @@ class PasswordResetsController < ApplicationController
|
||||
@user = User.find_by_email(params[:email])
|
||||
if @user
|
||||
@user.deliver_password_reset_instructions!
|
||||
flash[:notice] = "Instructions to reset your password have been mailed to you. Please check your email."
|
||||
flash[:notice] = 'Instructions to reset your password have been mailed to you. Please check your email'
|
||||
redirect_to root_url
|
||||
else
|
||||
flash[:notice] = "No user was found with that email adress"
|
||||
render :action => :new
|
||||
flash[:notice] = 'No user was found with that email adress'
|
||||
render action: :new
|
||||
end
|
||||
end
|
||||
|
||||
@@ -42,7 +42,7 @@ class PasswordResetsController < ApplicationController
|
||||
def load_user_using_perishable_token
|
||||
@user = User.find_using_perishable_token(params[:id])
|
||||
unless @user
|
||||
flash[:notice] = "We're sorry, but we couldn't locate your account. Try copy and pasting the url from the mail you received from us or restarting the password reset process"
|
||||
flash[:notice] = 'We\'re sorry, but we couldn\'t locate your account. Try copy and pasting the url from the mail you received from us or restarting the password reset process'
|
||||
redirect_to root_url
|
||||
end
|
||||
end
|
||||
|
||||
@@ -4,11 +4,11 @@ class PhenotypeCommentsController < ApplicationController
|
||||
|
||||
def new
|
||||
@phenotype_comment = PhenotypeComment.new
|
||||
@title = "Add comment"
|
||||
@title = 'Add comment'
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml { render :xml => @phenotype }
|
||||
format.xml { render xml: @phenotype }
|
||||
end
|
||||
end
|
||||
|
||||
@@ -18,14 +18,14 @@ class PhenotypeCommentsController < ApplicationController
|
||||
@phenotype_comment.reply_to_id = -1
|
||||
else
|
||||
|
||||
@potential_reply_id = @phenotype_comment.comment_text.split()[0].chomp(":").gsub("@#","").to_i
|
||||
@potential_reply_id = @phenotype_comment.comment_text.split()[0].chomp(':').gsub('@#','').to_i
|
||||
if PhenotypeComment.find_by_id(@potential_reply_id) != nil
|
||||
@phenotype_comment.reply_to_id = @potential_reply_id
|
||||
else
|
||||
@phenotype_comment.reply_to_id = -1
|
||||
end
|
||||
|
||||
@phenotype_comment.comment_text = @phenotype_comment.comment_text.gsub(/\A(\@\#\d*\:)/,"")
|
||||
@phenotype_comment.comment_text = @phenotype_comment.comment_text.gsub(/\A(\@\#\d*\:)/,'')
|
||||
end
|
||||
@phenotype_comment.user_id = current_user.id
|
||||
@phenotype_comment.phenotype_id = params[:phenotype_comment][:phenotype_id]
|
||||
@@ -38,9 +38,9 @@ class PhenotypeCommentsController < ApplicationController
|
||||
end
|
||||
end
|
||||
end
|
||||
redirect_to "/phenotypes/"+@phenotype_comment.phenotype_id.to_s+"#comments", :notice => 'Comment succesfully created.'
|
||||
redirect_to '/phenotypes/' +@phenotype_comment.phenotype_id.to_s+'#comments', notice: 'Comment succesfully created.'
|
||||
else
|
||||
render :action => "new"
|
||||
render action: 'new'
|
||||
end
|
||||
end
|
||||
|
||||
|
||||
@@ -1,7 +1,7 @@
|
||||
# frozen_string_literal: true
|
||||
class PhenotypeSetsController < ApplicationController
|
||||
before_filter :require_user
|
||||
|
||||
|
||||
def enter_userphenotypes
|
||||
puts params
|
||||
@phenotypeset = PhenotypeSet.find_by_id(params[:id])
|
||||
@@ -14,24 +14,24 @@ class PhenotypeSetsController < ApplicationController
|
||||
end
|
||||
@user = current_user
|
||||
end
|
||||
|
||||
|
||||
def save_user_phenotypes
|
||||
@user_phenotypes = params[:user_phenotypes]["user_phenotypes"]
|
||||
@user_phenotypes = params[:user_phenotypes]['user_phenotypes']
|
||||
puts @user_phenotypes
|
||||
@user_phenotypes.each do |up|
|
||||
if not up["variation"].empty?
|
||||
@phenotype = Phenotype.find_by_id(up["phenotype"].to_s)
|
||||
@user_phenotype = UserPhenotype.find_by_user_id_and_phenotype_id(current_user.id,up["phenotype"].to_s)
|
||||
if not up['variation'].empty?
|
||||
@phenotype = Phenotype.find_by_id(up['phenotype'].to_s)
|
||||
@user_phenotype = UserPhenotype.find_by_user_id_and_phenotype_id(current_user.id,up['phenotype'].to_s)
|
||||
if @user_phenotype == nil
|
||||
@user_phenotype = current_user.user_phenotypes.build
|
||||
@user_phenotype.phenotype_id = up["phenotype"].to_s
|
||||
@user_phenotype.phenotype_id = up['phenotype'].to_s
|
||||
end
|
||||
@user_phenotype.variation = up["variation"]
|
||||
@user_phenotype.variation = up['variation']
|
||||
@user_phenotype.save
|
||||
@phenotype.save
|
||||
end
|
||||
end
|
||||
end
|
||||
|
||||
|
||||
|
||||
|
||||
end
|
||||
|
||||
@@ -14,7 +14,7 @@ class PhenotypesController < ApplicationController
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml
|
||||
format.xml
|
||||
format.json do
|
||||
phenotypes_json =
|
||||
@phenotypes.find_each.map do |p|
|
||||
@@ -25,7 +25,7 @@ class PhenotypesController < ApplicationController
|
||||
number_of_users: p.number_of_users
|
||||
}
|
||||
end
|
||||
render :json => phenotypes_json
|
||||
render json: phenotypes_json
|
||||
end
|
||||
end
|
||||
end
|
||||
@@ -33,7 +33,10 @@ class PhenotypesController < ApplicationController
|
||||
def new
|
||||
@phenotype = Phenotype.new
|
||||
@user_phenotype = UserPhenotype.new
|
||||
@title = "Create a new phenotype"
|
||||
@title = 'Create a new phenotype'
|
||||
|
||||
# Make list of phenotypes for autocomplete
|
||||
@phenotype_list = Phenotype.pluck(:characteristic).to_json
|
||||
|
||||
# Make list of phenotypes for autocomplete
|
||||
@phenotype_list = Phenotype.pluck(:characteristic).to_json
|
||||
@@ -124,9 +127,9 @@ class PhenotypesController < ApplicationController
|
||||
@user_phenotype = UserPhenotype.find_by_phenotype_id_and_user_id(params[:id],current_user.id)
|
||||
if @user_phenotype != nil
|
||||
@users_variation = @user_phenotype.variation
|
||||
@variation_recommend_request = params[:id]+"=>"+@users_variation
|
||||
@variation_recommend_request = params[:id] + '=>' + @users_variation
|
||||
else
|
||||
@variation_recommend_request = ""
|
||||
@variation_recommend_request = ''
|
||||
end
|
||||
|
||||
@similar_combinations = @phenotype_recommender.for(@variation_recommend_request)
|
||||
@@ -135,7 +138,7 @@ class PhenotypesController < ApplicationController
|
||||
|
||||
@similar_combinations.each do |s|
|
||||
if @combination_counter < 3
|
||||
@phenotype = Phenotype.find_by_id(s.item_id.split("=>")[0])
|
||||
@phenotype = Phenotype.find_by(id: s.item_id.split('=>')[0])
|
||||
if current_user.phenotypes.include?(@phenotype) == false
|
||||
@similar_variations << s
|
||||
@combination_counter += 1
|
||||
@@ -145,11 +148,11 @@ class PhenotypesController < ApplicationController
|
||||
end
|
||||
end
|
||||
|
||||
@phenotype = Phenotype.find_by_id(params[:id])
|
||||
@phenotype = Phenotype.find_by(id: params[:id])
|
||||
|
||||
if @similar_phenotypes == [] and @similar_variations == []
|
||||
redirect_to :action => "index"
|
||||
else
|
||||
redirect_to action: 'index'
|
||||
else
|
||||
respond_to do |format|
|
||||
format.html
|
||||
end
|
||||
@@ -168,7 +171,7 @@ class PhenotypesController < ApplicationController
|
||||
|
||||
@genotypes.sort!{ |b,a| a.created_at <=> b.created_at }
|
||||
|
||||
render :action => "rss", :layout => false
|
||||
render action: 'rss', layout: false
|
||||
end
|
||||
|
||||
def get_genotypes
|
||||
@@ -185,29 +188,30 @@ class PhenotypesController < ApplicationController
|
||||
def json_variation
|
||||
@result = {}
|
||||
begin
|
||||
@phenotype = Phenotype.find_by_id(params[:phenotype_id])
|
||||
@result["id"] = @phenotype.id
|
||||
@result["characteristic"] = @phenotype.characteristic
|
||||
@result["description"] = @phenotype.description
|
||||
@result["known_variations"] = @phenotype.known_phenotypes
|
||||
@result["users"] = []
|
||||
@phenotype = Phenotype.find_by(id: params[:phenotype_id])
|
||||
@result['id'] = @phenotype.id
|
||||
@result['characteristic'] = @phenotype.characteristic
|
||||
@result['description'] = @phenotype.description
|
||||
@result['known_variations'] = @phenotype.known_phenotypes
|
||||
@result['users'] = []
|
||||
@phenotype.user_phenotypes.each do |up|
|
||||
@user_phenotype = {"user_id" => up.user_id,"variation" => up.variation}
|
||||
@result["users"] << @user_phenotype
|
||||
@user_phenotype = { 'user_id' => up.user_id,
|
||||
'variation' => up.variation }
|
||||
@result['users'] << @user_phenotype
|
||||
end
|
||||
rescue
|
||||
@result["error"] = "Sorry, this phenotype doesn't exist"
|
||||
@result['error'] = 'Sorry, this phenotype doesn\'t exist'
|
||||
end
|
||||
|
||||
respond_to do |format|
|
||||
format.json { render :json => @result }
|
||||
end
|
||||
format.json { render json: @result }
|
||||
end
|
||||
|
||||
end
|
||||
|
||||
def json
|
||||
if params[:user_id].index(",")
|
||||
@user_ids = params[:user_id].split(",")
|
||||
if params[:user_id].index(',')
|
||||
@user_ids = params[:user_id].split(',')
|
||||
@results = []
|
||||
@user_ids.each do |id|
|
||||
@new_param = {}
|
||||
@@ -215,9 +219,9 @@ class PhenotypesController < ApplicationController
|
||||
@results << json_element(@new_param)
|
||||
end
|
||||
|
||||
elsif params[:user_id].index("-")
|
||||
elsif params[:user_id].index('-')
|
||||
@results = []
|
||||
@id_array = params[:user_id].split("-")
|
||||
@id_array = params[:user_id].split('-')
|
||||
@user_ids = (@id_array[0].to_i..@id_array[1].to_i).to_a
|
||||
@user_ids.each do |id|
|
||||
@new_param = {}
|
||||
@@ -225,37 +229,37 @@ class PhenotypesController < ApplicationController
|
||||
@results << json_element(@new_param)
|
||||
end
|
||||
|
||||
else
|
||||
@results = json_element(params)
|
||||
end
|
||||
else
|
||||
@results = json_element(params)
|
||||
end
|
||||
|
||||
respond_to do |format|
|
||||
format.json { render :json => @results }
|
||||
format.json { render json: @results }
|
||||
end
|
||||
end
|
||||
|
||||
def json_element(params)
|
||||
begin
|
||||
@user = User.find_by_id(params[:user_id])
|
||||
@user = User.find_by(id: params[:user_id])
|
||||
@result = {}
|
||||
@user_phenotypes = UserPhenotype.where(user_id: @user.id)
|
||||
|
||||
@result["user"] = {}
|
||||
@result["user"]["name"] = @user.name
|
||||
@result["user"]["id"] = @user.id
|
||||
@result['user'] = {}
|
||||
@result['user']['name'] = @user.name
|
||||
@result['user']['id'] = @user.id
|
||||
|
||||
@phenotype_hash = {}
|
||||
|
||||
@user_phenotypes.each do |up|
|
||||
@phenotype_hash[up.phenotype.characteristic] = {}
|
||||
@phenotype_hash[up.phenotype.characteristic]["phenotype_id"] = up.phenotype.id
|
||||
@phenotype_hash[up.phenotype.characteristic]["variation"] = up.variation
|
||||
@phenotype_hash[up.phenotype.characteristic]['phenotype_id'] = up.phenotype.id
|
||||
@phenotype_hash[up.phenotype.characteristic]['variation'] = up.variation
|
||||
end
|
||||
|
||||
@result["phenotypes"] = @phenotype_hash
|
||||
@result['phenotypes'] = @phenotype_hash
|
||||
rescue
|
||||
@result = {}
|
||||
@result["error"] = "Sorry, we couldn't find any information for this user"
|
||||
@result['error'] = 'Sorry, we couldn\'t find any information for this user'
|
||||
end
|
||||
return @result
|
||||
end
|
||||
@@ -263,24 +267,24 @@ class PhenotypesController < ApplicationController
|
||||
private
|
||||
|
||||
def sort_column
|
||||
Phenotype.column_names.include?(params[:sort]) ? params[:sort] : "number_of_users"
|
||||
Phenotype.column_names.include?(params[:sort]) ? params[:sort] : 'number_of_users'
|
||||
end
|
||||
|
||||
private
|
||||
|
||||
def sort_column
|
||||
Phenotype.column_names.include?(params[:sort]) ? params[:sort] : "number_of_users"
|
||||
Phenotype.column_names.include?(params[:sort]) ? params[:sort] : 'number_of_users'
|
||||
end
|
||||
|
||||
def sort_direction
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : "desc"
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : 'desc'
|
||||
end
|
||||
|
||||
def check_and_award_new_phenotypes(amount, achievement_string)
|
||||
@achievement = Achievement.find_by_award(achievement_string)
|
||||
if current_user.phenotype_creation_counter >= amount and UserAchievement.find_by_achievement_id_and_user_id(@achievement.id,current_user.id) == nil
|
||||
|
||||
UserAchievement.create(:achievement_id => @achievement.id, :user_id => current_user.id)
|
||||
UserAchievement.create(achievement_id: @achievement.id, user_id: current_user.id)
|
||||
flash[:achievement] = %(Congratulations! You've unlocked an achievement: <a href="#{url_for(@achievement)}">#{@achievement.award}</a>).html_safe
|
||||
end
|
||||
end
|
||||
@@ -288,7 +292,7 @@ class PhenotypesController < ApplicationController
|
||||
def check_and_award_additional_phenotypes(amount, achievement_string)
|
||||
@achievement = Achievement.find_by_award(achievement_string)
|
||||
if current_user.phenotype_count >= amount and UserAchievement.find_by_achievement_id_and_user_id(@achievement.id,current_user.id) == nil
|
||||
UserAchievement.create(:user_id => current_user.id, :achievement_id => @achievement.id)
|
||||
UserAchievement.create(user_id: current_user.id, achievement_id: @achievement.id)
|
||||
flash[:achievement] = %(Congratulations! You've unlocked an achievement: <a href="#{url_for(@achievement)}">#{@achievement.award}</a>).html_safe
|
||||
end
|
||||
end
|
||||
|
||||
@@ -4,11 +4,11 @@ class PicturePhenotypeCommentsController < ApplicationController
|
||||
|
||||
def new
|
||||
@phenotype_comment = PicturePhenotypeComment.new
|
||||
@title = "Add comment"
|
||||
@title = 'Add comment'
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml { render :xml => @phenotype }
|
||||
format.xml { render xml: @phenotype }
|
||||
end
|
||||
end
|
||||
|
||||
@@ -18,19 +18,19 @@ class PicturePhenotypeCommentsController < ApplicationController
|
||||
@phenotype_comment.reply_to_id = -1
|
||||
else
|
||||
|
||||
@potential_reply_id = @phenotype_comment.comment_text.split()[0].chomp(":").gsub("@#","").to_i
|
||||
@potential_reply_id = @phenotype_comment.comment_text.split()[0].chomp(':').gsub('@#', '').to_i
|
||||
if PicturePhenotypeComment.find_by_id(@potential_reply_id) != nil
|
||||
@phenotype_comment.reply_to_id = @potential_reply_id
|
||||
else
|
||||
@phenotype_comment.reply_to_id = -1
|
||||
end
|
||||
|
||||
@phenotype_comment.comment_text = @phenotype_comment.comment_text.gsub(/\A(\@\#\d*\:)/,"")
|
||||
@phenotype_comment.comment_text = @phenotype_comment.comment_text.gsub(/\A(\@\#\d*\:)/, '')
|
||||
end
|
||||
@phenotype_comment.user_id = current_user.id
|
||||
@phenotype_comment.picture_phenotype_id = params[:picture_phenotype_comment][:picture_phenotype_id]
|
||||
if @phenotype_comment.save
|
||||
if @phenotype_comment.reply_to_id != -1
|
||||
if @phenotype_comment.reply_to_id != -1
|
||||
@reply_user = PicturePhenotypeComment.find_by_id(@phenotype_comment.reply_to_id).user
|
||||
if@reply_user != nil
|
||||
if @reply_user.message_on_phenotype_comment_reply == true
|
||||
@@ -38,9 +38,9 @@ class PicturePhenotypeCommentsController < ApplicationController
|
||||
end
|
||||
end
|
||||
end
|
||||
redirect_to "/picture_phenotypes/"+@phenotype_comment.picture_phenotype_id.to_s+"#comments", :notice => 'Comment succesfully created.'
|
||||
redirect_to '/picture_phenotypes/' + @phenotype_comment.picture_phenotype_id.to_s + '#comments', notice: 'Comment succesfully created.'
|
||||
else
|
||||
render :action => "new"
|
||||
render action: 'new'
|
||||
end
|
||||
end
|
||||
|
||||
|
||||
@@ -4,9 +4,9 @@ class PicturePhenotypesController < ApplicationController
|
||||
helper_method :sort_column, :sort_direction
|
||||
|
||||
def index
|
||||
@title = "Listing all phenotypes"
|
||||
@phenotypes = PicturePhenotype.order(sort_column + " " + sort_direction)
|
||||
@phenotypes_paginate = @phenotypes.paginate(:page => params[:page],:per_page => 10)
|
||||
@title = 'Listing all phenotypes'
|
||||
@phenotypes = PicturePhenotype.order(sort_column + ' ' + sort_direction)
|
||||
@phenotypes_paginate = @phenotypes.paginate(page: params[:page],per_page: 10)
|
||||
#@phenotypes_json = []
|
||||
#@phenotypes.each do |p|
|
||||
# @phenotype = {}
|
||||
@@ -18,15 +18,15 @@ class PicturePhenotypesController < ApplicationController
|
||||
#end
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml
|
||||
#format.json {render :json => @phenotypes_json}
|
||||
format.xml
|
||||
#format.json {render json: @phenotypes_json}
|
||||
end
|
||||
end
|
||||
|
||||
def new
|
||||
@phenotype = PicturePhenotype.new
|
||||
@user_phenotype = UserPicturePhenotype.new
|
||||
@title = "Create a new picture phenotype"
|
||||
@title = 'Create a new picture phenotype'
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
@@ -40,16 +40,16 @@ class PicturePhenotypesController < ApplicationController
|
||||
@phenotype = PicturePhenotype.create(picture_phenotype_params)
|
||||
|
||||
# award: created one (or more) phenotypes
|
||||
current_user.update_attributes(:phenotype_creation_counter => (current_user.phenotype_creation_counter + 1) )
|
||||
current_user.update_attributes(phenotype_creation_counter: (current_user.phenotype_creation_counter + 1) )
|
||||
|
||||
check_and_award_new_phenotypes(1, "Created a new phenotype")
|
||||
check_and_award_new_phenotypes(5, "Created 5 new phenotypes")
|
||||
check_and_award_new_phenotypes(10, "Created 10 new phenotypes")
|
||||
check_and_award_new_phenotypes(1, 'Created a new phenotype')
|
||||
check_and_award_new_phenotypes(5, 'Created 5 new phenotypes')
|
||||
check_and_award_new_phenotypes(10, 'Created 10 new phenotypes')
|
||||
end
|
||||
|
||||
if params[:picture_phenotype][:characteristic] == ""
|
||||
flash[:warning] = "Phenotype characteristic may not be empty"
|
||||
redirect_to :action => "new"
|
||||
if params[:picture_phenotype][:characteristic] == ''
|
||||
flash[:warning] = 'Phenotype characteristic may not be empty'
|
||||
redirect_to action: 'new'
|
||||
else
|
||||
|
||||
@phenotype.save
|
||||
@@ -75,22 +75,22 @@ class PicturePhenotypesController < ApplicationController
|
||||
|
||||
redirect_to current_user
|
||||
else
|
||||
flash[:warning] = "Something went wrong in creating the phenotype"
|
||||
redirect_to :action => "new"
|
||||
flash[:warning] = 'Something went wrong in creating the phenotype'
|
||||
redirect_to action: 'new'
|
||||
end
|
||||
else
|
||||
flash[:warning] = "You have already entered your variation at this phenotype"
|
||||
redirect_to :action => "new"
|
||||
flash[:warning] = 'You have already entered your variation at this phenotype'
|
||||
redirect_to action: 'new'
|
||||
end
|
||||
end
|
||||
end
|
||||
|
||||
def show
|
||||
#@phenotypes = Phenotype.where(:user_id => current_user.id).all
|
||||
#@title = "Phenotypes"
|
||||
#@phenotypes = Phenotype.where(user_id: current_user.id).all
|
||||
#@title = 'Phenotypes'
|
||||
@phenotype = PicturePhenotype.find(params[:id]) || not_found
|
||||
@comments = PicturePhenotypeComment
|
||||
.where(:picture_phenotype_id => params[:id])
|
||||
.where(picture_phenotype_id: params[:id])
|
||||
.order(:created_at)
|
||||
@phenotype_comment = PicturePhenotypeComment.new
|
||||
if current_user and UserPicturePhenotype.find_by_user_id_and_picture_phenotype_id(current_user.id,@phenotype.id)
|
||||
@@ -117,30 +117,30 @@ class PicturePhenotypesController < ApplicationController
|
||||
|
||||
@genotypes.sort!{ |b,a| a.created_at <=> b.created_at }
|
||||
|
||||
render :action => "rss", :layout => false
|
||||
render action: 'rss', layout: false
|
||||
end
|
||||
|
||||
private
|
||||
|
||||
def sort_column
|
||||
PicturePhenotype.column_names.include?(params[:sort]) ? params[:sort] : "number_of_users"
|
||||
PicturePhenotype.column_names.include?(params[:sort]) ? params[:sort] : 'number_of_users'
|
||||
end
|
||||
|
||||
private
|
||||
|
||||
def sort_column
|
||||
PicturePhenotype.column_names.include?(params[:sort]) ? params[:sort] : "number_of_users"
|
||||
PicturePhenotype.column_names.include?(params[:sort]) ? params[:sort] : 'number_of_users'
|
||||
end
|
||||
|
||||
def sort_direction
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : "desc"
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : 'desc'
|
||||
end
|
||||
|
||||
def check_and_award_new_phenotypes(amount, achievement_string)
|
||||
@achievement = Achievement.find_by_award(achievement_string)
|
||||
if current_user.phenotype_creation_counter >= amount and UserAchievement.find_by_achievement_id_and_user_id(@achievement.id,current_user.id) == nil
|
||||
|
||||
UserAchievement.create(:achievement_id => @achievement.id, :user_id => current_user.id)
|
||||
UserAchievement.create(achievement_id: @achievement.id, user_id: current_user.id)
|
||||
flash[:achievement] = %(Congratulations! You've unlocked an achievement: <a href="#{url_for(@achievement)}">#{@achievement.award}</a>).html_safe
|
||||
end
|
||||
end
|
||||
@@ -148,7 +148,7 @@ class PicturePhenotypesController < ApplicationController
|
||||
def check_and_award_additional_phenotypes(amount, achievement_string)
|
||||
@achievement = Achievement.find_by_award(achievement_string)
|
||||
if current_user.phenotype_count >= amount and UserAchievement.find_by_achievement_id_and_user_id(@achievement.id,current_user.id) == nil
|
||||
UserAchievement.create(:user_id => current_user.id, :achievement_id => @achievement.id)
|
||||
UserAchievement.create(user_id: current_user.id, achievement_id: @achievement.id)
|
||||
flash[:achievement] = %(Congratulations! You've unlocked an achievement: <a href="#{url_for(@achievement)}">#{@achievement.award}</a>).html_safe
|
||||
end
|
||||
end
|
||||
|
||||
@@ -2,7 +2,7 @@
|
||||
class SearchResultsController < ApplicationController
|
||||
|
||||
def search
|
||||
@title = "Search results"
|
||||
@title = 'Search results'
|
||||
@all_len = 0
|
||||
[
|
||||
:snps, :phenotypes, :users, :snp_comments, :phenotype_comments,
|
||||
|
||||
@@ -42,7 +42,7 @@ class SnpCommentsController < ApplicationController
|
||||
end
|
||||
end
|
||||
end
|
||||
redirect_to "/snps/#{@snp_comment.snp_id}#comments", notice: 'Comment succesfully created.'
|
||||
redirect_to "/snps/#{@snp_comment.snp_id}#comments", notice: 'Comment successfully created.'
|
||||
else
|
||||
render action: 'new'
|
||||
end
|
||||
|
||||
@@ -4,9 +4,9 @@ class SnpsController < ApplicationController
|
||||
before_filter :find_snp, except: [:index, :json,:json_annotation]
|
||||
|
||||
def index
|
||||
@snps = Snp.order(sort_column + " "+ sort_direction)
|
||||
@snps = Snp.order(sort_column + ' ' + sort_direction)
|
||||
@snps_paginate = @snps.paginate(page: params[:page], per_page: 10)
|
||||
@title = "Listing all SNPs"
|
||||
@title = 'Listing all SNPs'
|
||||
end
|
||||
|
||||
def show
|
||||
@@ -41,8 +41,8 @@ class SnpsController < ApplicationController
|
||||
|
||||
def json
|
||||
# TODO: Refactor this. - Helge
|
||||
if params[:user_id].index(",")
|
||||
@user_ids = params[:user_id].split(",")
|
||||
if params[:user_id].index(',')
|
||||
@user_ids = params[:user_id].split(',')
|
||||
@results = []
|
||||
@user_ids.each do |id|
|
||||
@new_param = {}
|
||||
@@ -50,9 +50,9 @@ class SnpsController < ApplicationController
|
||||
@new_param[:snp_name] = params[:snp_name].downcase
|
||||
@results << json_element(@new_param)
|
||||
end
|
||||
elsif params[:user_id].index("-")
|
||||
elsif params[:user_id].index('-')
|
||||
@results = []
|
||||
@id_array = params[:user_id].split("-")
|
||||
@id_array = params[:user_id].split('-')
|
||||
@user_ids = (@id_array[0].to_i..@id_array[1].to_i).to_a
|
||||
@user_ids.each do |id|
|
||||
@new_param = {}
|
||||
@@ -72,79 +72,79 @@ class SnpsController < ApplicationController
|
||||
def make_annotation(result, snp, name)
|
||||
# TODO: Refactor this. - Helge
|
||||
result[name] = {}
|
||||
result[name]["name"] = snp.name
|
||||
result[name]["chromosome"] = snp.chromosome
|
||||
result[name]["position"] = snp.position
|
||||
result[name]["allele_frequency"] = snp.allele_frequency
|
||||
result[name]["genotype_frequency"] = snp.genotype_frequency
|
||||
result[name]["annotations"] = {}
|
||||
result[name]["annotations"]["mendeley"] = []
|
||||
puts "got snp-details"
|
||||
result[name]['name'] = snp.name
|
||||
result[name]['chromosome'] = snp.chromosome
|
||||
result[name]['position'] = snp.position
|
||||
result[name]['allele_frequency'] = snp.allele_frequency
|
||||
result[name]['genotype_frequency'] = snp.genotype_frequency
|
||||
result[name]['annotations'] = {}
|
||||
result[name]['annotations']['mendeley'] = []
|
||||
puts 'got snp-details'
|
||||
snp.mendeley_papers.each do |mp|
|
||||
@mendeley = {}
|
||||
@mendeley["author"] = mp.first_author
|
||||
@mendeley["title"] = mp.title
|
||||
@mendeley["publication_year"] = mp.pub_year
|
||||
@mendeley["number_of_readers"] = mp.reader
|
||||
@mendeley["open_access"] = mp.open_access
|
||||
@mendeley["url"] = mp.mendeley_url
|
||||
@mendeley["doi"] = mp.doi
|
||||
result[name]["annotations"]["mendeley"] << @mendeley
|
||||
@mendeley['author'] = mp.first_author
|
||||
@mendeley['title'] = mp.title
|
||||
@mendeley['publication_year'] = mp.pub_year
|
||||
@mendeley['number_of_readers'] = mp.reader
|
||||
@mendeley['open_access'] = mp.open_access
|
||||
@mendeley['url'] = mp.mendeley_url
|
||||
@mendeley['doi'] = mp.doi
|
||||
result[name]['annotations']['mendeley'] << @mendeley
|
||||
end
|
||||
puts "got mendeley-details"
|
||||
result[name]["annotations"]["plos"] = []
|
||||
puts 'got mendeley-details'
|
||||
result[name]['annotations']['plos'] = []
|
||||
snp.plos_papers.each do |mp|
|
||||
@plos = {}
|
||||
@plos["author"] = mp.first_author
|
||||
@plos["title"] = mp.title
|
||||
@plos["publication_date"] = mp.pub_date
|
||||
@plos["number_of_readers"] = mp.reader
|
||||
@plos["url"] = "http://dx.doi.org/"+mp.doi
|
||||
@plos["doi"] = mp.doi
|
||||
result[name]["annotations"]["plos"] << @plos
|
||||
@plos['author'] = mp.first_author
|
||||
@plos['title'] = mp.title
|
||||
@plos['publication_date'] = mp.pub_date
|
||||
@plos['number_of_readers'] = mp.reader
|
||||
@plos['url'] = 'http://dx.doi.org/'+mp.doi
|
||||
@plos['doi'] = mp.doi
|
||||
result[name]['annotations']['plos'] << @plos
|
||||
end
|
||||
puts "got plos-details"
|
||||
result[name]["annotations"]["snpedia"] = []
|
||||
puts 'got plos-details'
|
||||
result[name]['annotations']['snpedia'] = []
|
||||
snp.snpedia_papers.each do |mp|
|
||||
snpedia = {}
|
||||
snpedia["url"] = mp.url
|
||||
snpedia["summary"] = mp.summary
|
||||
result[name]["annotations"]["snpedia"] << snpedia
|
||||
snpedia['url'] = mp.url
|
||||
snpedia['summary'] = mp.summary
|
||||
result[name]['annotations']['snpedia'] << snpedia
|
||||
end
|
||||
puts "got snpedia-details"
|
||||
result[name]["annotations"]["pgp_annotations"] = []
|
||||
puts 'got snpedia-details'
|
||||
result[name]['annotations']['pgp_annotations'] = []
|
||||
snp.pgp_annotations.each do |p|
|
||||
@pgp = {}
|
||||
@pgp["gene"] = p.gene
|
||||
@pgp["impact"] = p.qualified_impact
|
||||
@pgp["inheritance"] = p.inheritance
|
||||
@pgp["trait"] = p.trait
|
||||
@pgp["summary"] = p.summary
|
||||
result[name]["annotations"]["pgp_annotations"] << @pgp
|
||||
@pgp['gene'] = p.gene
|
||||
@pgp['impact'] = p.qualified_impact
|
||||
@pgp['inheritance'] = p.inheritance
|
||||
@pgp['trait'] = p.trait
|
||||
@pgp['summary'] = p.summary
|
||||
result[name]['annotations']['pgp_annotations'] << @pgp
|
||||
end
|
||||
puts "got pgp details"
|
||||
result[name]["annotations"]["genome_gov_publications"] = []
|
||||
puts 'got pgp details'
|
||||
result[name]['annotations']['genome_gov_publications'] = []
|
||||
snp.genome_gov_papers.each do |g|
|
||||
@gov = {}
|
||||
@gov["title"] = g.title
|
||||
@gov["first_author"] = g.first_author
|
||||
@gov["pubmed_link"] = g.pubmed_link
|
||||
@gov["publication_date"] = g.pub_date
|
||||
@gov["journal"] = g.journal
|
||||
@gov["trait"] = g.trait
|
||||
@gov["pvalue"] = g.pvalue
|
||||
@gov["pvalue_description"] = g.pvalue_description
|
||||
@gov["confidence_interval"] = g.confidence_interval
|
||||
result[name]["annotations"]["genome_gov_publications"] << @gov
|
||||
@gov['title'] = g.title
|
||||
@gov['first_author'] = g.first_author
|
||||
@gov['pubmed_link'] = g.pubmed_link
|
||||
@gov['publication_date'] = g.pub_date
|
||||
@gov['journal'] = g.journal
|
||||
@gov['trait'] = g.trait
|
||||
@gov['pvalue'] = g.pvalue
|
||||
@gov['pvalue_description'] = g.pvalue_description
|
||||
@gov['confidence_interval'] = g.confidence_interval
|
||||
result[name]['annotations']['genome_gov_publications'] << @gov
|
||||
end
|
||||
puts "got genome.gov details"
|
||||
puts 'got genome.gov details'
|
||||
return result
|
||||
end
|
||||
|
||||
def json_annotation
|
||||
result = {}
|
||||
if params[:snp_name].index(",")
|
||||
snps = params[:snp_name].split(",")
|
||||
if params[:snp_name].index(',')
|
||||
snps = params[:snp_name].split(',')
|
||||
snps.each do |s|
|
||||
snp = Snp.find_by_name(s)
|
||||
# did we get a SNP?
|
||||
@@ -153,7 +153,7 @@ class SnpsController < ApplicationController
|
||||
else
|
||||
# empty dictionary, else we get a half-filled dictionary for EXISTS, DOESN'T EXIST, EXISTS
|
||||
result = {}
|
||||
result["error"] = "Sorry, we couldn't find SNP " + s
|
||||
result['error'] = 'Sorry, we couldn\'t find SNP' + s
|
||||
# just stop. Alternative: we could put in one error per SNP?
|
||||
break
|
||||
end
|
||||
@@ -162,9 +162,9 @@ class SnpsController < ApplicationController
|
||||
snp = Snp.find_by_name(params[:snp_name].downcase)
|
||||
if snp
|
||||
puts snp.name
|
||||
result = make_annotation(result, snp, "snp")
|
||||
result = make_annotation(result, snp, 'snp')
|
||||
else
|
||||
result["error"] = "Sorry, we couldn't find SNP " + params[:snp_name]
|
||||
result['error'] = 'Sorry, we couldn\'t find SNP ' + params[:snp_name]
|
||||
end
|
||||
end
|
||||
|
||||
@@ -177,11 +177,11 @@ class SnpsController < ApplicationController
|
||||
private
|
||||
|
||||
def sort_column
|
||||
Snp.column_names.include?(params[:sort]) ? params[:sort] : "ranking"
|
||||
Snp.column_names.include?(params[:sort]) ? params[:sort] : 'ranking'
|
||||
end
|
||||
|
||||
def sort_direction
|
||||
%w[asc desc].include?(params[:direction]) ? params[:direction] : "desc"
|
||||
%w[asc desc].include?(params[:direction]) ? params[:direction] : 'desc'
|
||||
end
|
||||
|
||||
def json_element(params)
|
||||
@@ -189,10 +189,10 @@ class SnpsController < ApplicationController
|
||||
@result = {}
|
||||
begin
|
||||
@snp = params[:snp] || Snp.find_by_name(params[:snp_name].downcase)
|
||||
@result["snp"] = {}
|
||||
@result["snp"]["name"] = @snp.name
|
||||
@result["snp"]["chromosome"] = @snp.chromosome
|
||||
@result["snp"]["position"] = @snp.position
|
||||
@result['snp'] = {}
|
||||
@result['snp']['name'] = @snp.name
|
||||
@result['snp']['chromosome'] = @snp.chromosome
|
||||
@result['snp']['position'] = @snp.position
|
||||
|
||||
@user = User.find_by_id(params[:user_id])
|
||||
# Same hacky fix as above on line 35 - Philipp
|
||||
@@ -206,18 +206,18 @@ class SnpsController < ApplicationController
|
||||
|
||||
@user_snps.each do |us|
|
||||
@genotype_hash = {}
|
||||
@genotype_hash["genotype_id"] = us.genotype_id
|
||||
@genotype_hash["local_genotype"] = us.local_genotype
|
||||
@genotype_hash['genotype_id'] = us.genotype_id
|
||||
@genotype_hash['local_genotype'] = us.local_genotype
|
||||
@genotypes_array << @genotype_hash
|
||||
end
|
||||
|
||||
@result["user"] = {}
|
||||
@result["user"]["name"] = @user.name
|
||||
@result["user"]["id"] = @user.id
|
||||
@result["user"]["genotypes"] = @genotypes_array
|
||||
@result['user'] = {}
|
||||
@result['user']['name'] = @user.name
|
||||
@result['user']['id'] = @user.id
|
||||
@result['user']['genotypes'] = @genotypes_array
|
||||
rescue
|
||||
@result = {}
|
||||
@result["error"] = "Sorry, we couldn't find any information for SNP "+params[:snp_name].to_s+" and user "+params[:user_id].to_s
|
||||
@result['error'] = "Sorry, we couldn't find any information for SNP "+params[:snp_name].to_s+" and user "+params[:user_id].to_s
|
||||
end
|
||||
return @result
|
||||
end
|
||||
@@ -230,7 +230,7 @@ class SnpsController < ApplicationController
|
||||
# the request path will not match the post_path, and we should do
|
||||
# a 301 redirect that uses the current friendly id.
|
||||
if request.path != snp_path(@snp)
|
||||
if request.path.index(".json") == nil
|
||||
if request.path.index('.json') == nil
|
||||
return redirect_to @snp, status: :moved_permanently
|
||||
end
|
||||
end
|
||||
|
||||
@@ -1,26 +1,26 @@
|
||||
# frozen_string_literal: true
|
||||
class StaticController < ApplicationController
|
||||
def index
|
||||
@title = "Welcome"
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml # just for the hell of it
|
||||
end
|
||||
end
|
||||
|
||||
def faq
|
||||
@title = "FAQ"
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml
|
||||
end
|
||||
end
|
||||
|
||||
def press
|
||||
@title = "openSNP in the press"
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml
|
||||
end
|
||||
def index
|
||||
@title = 'Welcome'
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml # just for the hell of it
|
||||
end
|
||||
end
|
||||
|
||||
def faq
|
||||
@title = 'FAQ'
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml
|
||||
end
|
||||
end
|
||||
|
||||
def press
|
||||
@title = 'openSNP in the press'
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml
|
||||
end
|
||||
end
|
||||
end
|
||||
|
||||
21
app/controllers/updates_controller.rb
Normal file
21
app/controllers/updates_controller.rb
Normal file
@@ -0,0 +1,21 @@
|
||||
# frozen_string_literal: true
|
||||
|
||||
class UpdatesController < ApplicationController
|
||||
def index
|
||||
@new_genotypes = Genotype.order('created_at DESC').limit(20)
|
||||
@new_users = User.order('created_at DESC').limit(20)
|
||||
@new_phenotypes = Phenotype.order('created_at DESC').limit(20)
|
||||
@new_phenotype_comments = PhenotypeComment.order('created_at DESC').limit(20)
|
||||
@new_snp_comments = SnpComment.order('created_at DESC').limit(20)
|
||||
|
||||
@newest_plos_paper = PlosPaper.order('created_at DESC').limit(20)
|
||||
@newest_mendeley_paper = MendeleyPaper.order('created_at DESC').limit(20)
|
||||
|
||||
@newest_paper = @newest_mendeley_paper | @newest_plos_paper
|
||||
@newest_paper.sort! { |a, b| b.created_at <=> a.created_at }
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
end
|
||||
end
|
||||
end
|
||||
@@ -4,7 +4,7 @@ class UserPhenotypesController < ApplicationController
|
||||
|
||||
def new
|
||||
@user_phenotype = UserPhenotype.new
|
||||
@title = "Add variation"
|
||||
@title = 'Add variation'
|
||||
|
||||
if params[:phenotype]
|
||||
@phenotype = Phenotype.find(params[:phenotype])
|
||||
@@ -17,7 +17,7 @@ class UserPhenotypesController < ApplicationController
|
||||
respond_to do |format|
|
||||
format.js
|
||||
format.html
|
||||
format.xml { render :xml => @phenotype }
|
||||
format.xml { render xml: @phenotype }
|
||||
end
|
||||
end
|
||||
|
||||
@@ -45,30 +45,32 @@ class UserPhenotypesController < ApplicationController
|
||||
check_and_award_additional_phenotypes(100, "Entered 100 additional phenotypes")
|
||||
|
||||
if @js_modal == true
|
||||
redirect_to "/users/"+current_user.id.to_s
|
||||
redirect_to '/users/' + current_user.id.to_s
|
||||
else
|
||||
redirect_to "/recommend_phenotype/"+@user_phenotype.phenotype_id.to_s, :notice => 'Variation successfully saved'
|
||||
redirect_to '/recommend_phenotype/' + @user_phenotype.phenotype_id.to_s,
|
||||
notice: 'Variation successfully saved'
|
||||
end
|
||||
else
|
||||
flash[:warning] = "Please enter a variation."
|
||||
redirect_to "/users/"+current_user.id.to_s
|
||||
flash[:warning] = 'Please enter a variation'
|
||||
redirect_to '/users/' + current_user.id.to_s
|
||||
end
|
||||
else
|
||||
redirect_to "/phenotypes/"+@user_phenotype.phenotype_id.to_s, :notice => 'You already have a variation entered'
|
||||
redirect_to '/phenotypes/' + @user_phenotype.phenotype_id.to_s,
|
||||
notice: 'You already have a variation entered'
|
||||
end
|
||||
end
|
||||
|
||||
private
|
||||
|
||||
def check_and_award_new_phenotypes(amount, achievement_string)
|
||||
if current_user.phenotype_creation_counter >= amount and UserAchievement.find_by_achievement_id_and_user_id(Achievement.find_by_award(achievement_string).id,current_user.id) == nil
|
||||
UserAchievement.create(:achievement_id => Achievement.find_by_award(achievement_string).id, :user_id => current_user.id)
|
||||
if current_user.phenotype_creation_counter >= amount and UserAchievement.find_by(achievement_id: Achievement.find_by_award(achievement_string).id,user_id:current_user.id) == nil
|
||||
UserAchievement.create(achievement_id: Achievement.find_by(award: achievement_string).id, user_id: current_user.id)
|
||||
end
|
||||
end
|
||||
|
||||
def check_and_award_additional_phenotypes(amount, achievement_string)
|
||||
if current_user.phenotype_count >= amount and UserAchievement.find_by_achievement_id_and_user_id(Achievement.find_by_award(achievement_string).id,current_user.id) == nil
|
||||
UserAchievement.create(:user_id => current_user.id, :achievement_id => Achievement.find_by_award(achievement_string).id)
|
||||
if current_user.phenotype_count >= amount and UserAchievement.find_by(achievement_id: Achievement.find_by_award(achievement_string).id,user_id: current_user.id) == nil
|
||||
UserAchievement.create(user_id: current_user.id, achievement_id: Achievement.find_by_award(achievement_string).id)
|
||||
end
|
||||
end
|
||||
|
||||
|
||||
@@ -4,7 +4,7 @@ class UserPicturePhenotypesController < ApplicationController
|
||||
|
||||
def new
|
||||
@user_phenotype = UserPicturePhenotype.new
|
||||
@title = "Add variation"
|
||||
@title = 'Add variation'
|
||||
|
||||
if params[:phenotype]
|
||||
@phenotype = PicturePhenotype.find(params[:picture_phenotype])
|
||||
@@ -17,7 +17,7 @@ class UserPicturePhenotypesController < ApplicationController
|
||||
respond_to do |format|
|
||||
format.js
|
||||
format.html
|
||||
format.xml { render :xml => @phenotype }
|
||||
format.xml { render xml: @phenotype }
|
||||
end
|
||||
end
|
||||
|
||||
@@ -25,7 +25,7 @@ class UserPicturePhenotypesController < ApplicationController
|
||||
@user_phenotype = UserPicturePhenotype.find_by_user_id_and_picture_phenotype_id(current_user.id,params[:user_picture_phenotype][:picture_phenotype_id])
|
||||
@user_phenotype.phenotype_picture = params[:user_picture_phenotype][:phenotype_picture]
|
||||
@user_phenotype.save()
|
||||
redirect_to "/picture_phenotypes/"+@user_phenotype.picture_phenotype_id.to_s, :notice => 'Variation successfully updated'
|
||||
redirect_to '/picture_phenotypes/'+@user_phenotype.picture_phenotype_id.to_s, notice: 'Variation successfully updated'
|
||||
end
|
||||
|
||||
def delete
|
||||
@@ -33,9 +33,9 @@ class UserPicturePhenotypesController < ApplicationController
|
||||
@phenotype = @user_phenotype.picture_phenotype
|
||||
if @user_phenotype.user_id == current_user.id
|
||||
@user_phenotype.delete()
|
||||
redirect_to "/picture_phenotypes/"+@user_phenotype.picture_phenotype_id.to_s, :notice => 'Variation successfully deleted'
|
||||
redirect_to "/picture_phenotypes/"+@user_phenotype.picture_phenotype_id.to_s, notice: 'Variation successfully deleted'
|
||||
else
|
||||
redirect_to "/picture_phenotypes/"+@user_phenotype.picture_phenotype_id.to_s, :notice => 'Whops, something went wrong!'
|
||||
redirect_to '/picture_phenotypes/'+@user_phenotype.picture_phenotype_id.to_s, notice: 'Whops, something went wrong'
|
||||
end
|
||||
end
|
||||
|
||||
@@ -67,16 +67,16 @@ class UserPicturePhenotypesController < ApplicationController
|
||||
check_and_award_additional_phenotypes(100, "Entered 100 additional phenotypes")
|
||||
|
||||
if @js_modal == true
|
||||
redirect_to "/users/"+current_user.id.to_s
|
||||
redirect_to '/users/' + current_user.id.to_s
|
||||
else
|
||||
redirect_to "/picture_phenotypes/"+@user_phenotype.picture_phenotype_id.to_s, :notice => 'Variation successfully saved'
|
||||
redirect_to '/picture_phenotypes/' + @user_phenotype.picture_phenotype_id.to_s, notice: 'Variation successfully saved'
|
||||
end
|
||||
else
|
||||
flash[:warning] = "Please enter a variation."
|
||||
redirect_to "/users/"+current_user.id.to_s
|
||||
flash[:warning] = 'Please enter a variation'
|
||||
redirect_to '/users/' + current_user.id.to_s
|
||||
end
|
||||
else
|
||||
redirect_to "/picture_phenotypes/"+@user_phenotype.picture_phenotype_id.to_s, :notice => 'You already have a variation entered'
|
||||
redirect_to '/picture_phenotypes/' + @user_phenotype.picture_phenotype_id.to_s, notice: 'You already have a variation entered'
|
||||
end
|
||||
end
|
||||
|
||||
@@ -84,13 +84,13 @@ class UserPicturePhenotypesController < ApplicationController
|
||||
|
||||
def check_and_award_new_phenotypes(amount, achievement_string)
|
||||
if current_user.phenotype_creation_counter >= amount and UserAchievement.find_by_achievement_id_and_user_id(Achievement.find_by_award(achievement_string).id,current_user.id) == nil
|
||||
UserAchievement.create(:achievement_id => Achievement.find_by_award(achievement_string).id, :user_id => current_user.id)
|
||||
UserAchievement.create(achievement_id: Achievement.find_by_award(achievement_string).id, user_id: current_user.id)
|
||||
end
|
||||
end
|
||||
|
||||
def check_and_award_additional_phenotypes(amount, achievement_string)
|
||||
if current_user.phenotype_count >= amount and UserAchievement.find_by_achievement_id_and_user_id(Achievement.find_by_award(achievement_string).id,current_user.id) == nil
|
||||
UserAchievement.create(:user_id => current_user.id, :achievement_id => Achievement.find_by_award(achievement_string).id)
|
||||
UserAchievement.create(user_id: current_user.id, achievement_id: Achievement.find_by_award(achievement_string).id)
|
||||
end
|
||||
end
|
||||
|
||||
|
||||
@@ -1,26 +1,26 @@
|
||||
# frozen_string_literal: true
|
||||
class UserSessionsController < ApplicationController
|
||||
before_filter :require_no_user, :only => [:new, :create]
|
||||
before_filter :require_user, :only => :destroy
|
||||
before_filter :require_no_user, only: [:new, :create]
|
||||
before_filter :require_user, only: :destroy
|
||||
|
||||
def new
|
||||
@user_session = UserSession.new
|
||||
@title = "Login"
|
||||
@title = 'Login'
|
||||
end
|
||||
|
||||
def create
|
||||
@user_session = UserSession.new(user_session_params)
|
||||
if @user_session.save
|
||||
flash[:notice] = "Login successful!"
|
||||
flash[:notice] = 'Login successful!'
|
||||
redirect_to @user_session.user
|
||||
else
|
||||
render :action => :new
|
||||
render action: :new
|
||||
end
|
||||
end
|
||||
|
||||
def destroy
|
||||
current_user_session.destroy
|
||||
flash[:notice] = "Logout successful!"
|
||||
flash[:notice] = 'Logout successful!'
|
||||
redirect_to root_url
|
||||
end
|
||||
|
||||
|
||||
@@ -10,7 +10,7 @@ class UserSnpsController < ApplicationController
|
||||
@user_snps = Snp.find_by_name(params[:snp_name]).user_snps.includes(:user)
|
||||
render layout: false
|
||||
else
|
||||
render text: 'Something went wrong.', layout: false
|
||||
render text: 'Something went wrong', layout: false
|
||||
end
|
||||
end
|
||||
end
|
||||
|
||||
@@ -3,15 +3,15 @@ class UsersController < ApplicationController
|
||||
|
||||
helper_method :sort_column, :sort_direction
|
||||
before_filter :require_owner, only: [ :update, :destroy, :edit, :changepassword ]
|
||||
before_filter :require_no_user, :only => [:new, :create]
|
||||
before_filter :require_no_user, only: [:new, :create]
|
||||
|
||||
def new
|
||||
@user = User.new
|
||||
@title = "Sign up"
|
||||
@title = 'Sign up'
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.xml { render :xml => @user }
|
||||
format.xml { render xml: @user }
|
||||
end
|
||||
end
|
||||
|
||||
@@ -19,11 +19,11 @@ class UsersController < ApplicationController
|
||||
@user = User.new(user_params)
|
||||
|
||||
if not params[:read]
|
||||
flash[:warning] = "You must tick the box to proceed!"
|
||||
flash[:warning] = 'You must tick the box to proceed'
|
||||
end
|
||||
|
||||
if params[:read] && verify_recaptcha(model: @user) && @user.save
|
||||
flash[:notice] = "Account registered!"
|
||||
flash[:notice] = 'Account registered'
|
||||
UserMailer.welcome_user(@user).deliver_later
|
||||
redirect_to @user
|
||||
else
|
||||
@@ -35,9 +35,9 @@ class UsersController < ApplicationController
|
||||
def index
|
||||
# showing all users
|
||||
# TODO: Refactor this. - Helge
|
||||
@users = User.order(sort_column + " " + sort_direction)
|
||||
@users_paginate = @users.paginate(:page => params[:page], :per_page => 10)
|
||||
@title = "Listing all users"
|
||||
@users = User.order(sort_column + ' ' + sort_direction)
|
||||
@users_paginate = @users.paginate(page: params[:page], per_page: 10)
|
||||
@title = 'Listing all users'
|
||||
|
||||
if request.format.json?
|
||||
@result = []
|
||||
@@ -45,41 +45,41 @@ class UsersController < ApplicationController
|
||||
@users = User.all
|
||||
@users.each do |u|
|
||||
@user = {}
|
||||
@user["name"] = u.name
|
||||
@user["id"] = u.id
|
||||
@user["genotypes"] = []
|
||||
@user['name'] = u.name
|
||||
@user['id'] = u.id
|
||||
@user['genotypes'] = []
|
||||
Genotype.where(user_id: u.id).each do |g|
|
||||
@genotype = {}
|
||||
@genotype["id"] = g.id
|
||||
@genotype["filetype"] = g.filetype
|
||||
@genotype["download_url"] = 'http://opensnp.org/data/' + g.fs_filename
|
||||
@user["genotypes"] << @genotype
|
||||
@genotype['id'] = g.id
|
||||
@genotype['filetype'] = g.filetype
|
||||
@genotype['download_url'] = 'http://opensnp.org/data/' + g.fs_filename
|
||||
@user['genotypes'] << @genotype
|
||||
end
|
||||
@result << @user
|
||||
end
|
||||
|
||||
rescue
|
||||
@result = {}
|
||||
@result["error"] = "Sorry, we couldn't find any users"
|
||||
@result['error'] = 'Sorry, we couldn\'t find any users'
|
||||
end
|
||||
end
|
||||
|
||||
respond_to do |format|
|
||||
format.html
|
||||
format.json { render :json => @result }
|
||||
format.json { render json: @result }
|
||||
end
|
||||
end
|
||||
|
||||
def show
|
||||
# showing a single user's page
|
||||
@user = User.find_by_id(params[:id]) || not_found
|
||||
@title = @user.name + "'s page"
|
||||
@title = @user.name + '\'s page'
|
||||
@first_name = @user.name.split.first
|
||||
@user_phenotypes = @user.user_phenotypes
|
||||
@received_messages = @user.messages.where(sent: false).order('created_at DESC')
|
||||
@sent_messages = @user.messages.where(:sent => true).order('created_at DESC')
|
||||
@phenotype_comments = PhenotypeComment.where(:user_id => @user.id).paginate(:page => params[:page])
|
||||
@snp_comments = SnpComment.where(:user_id => @user.id)
|
||||
@sent_messages = @user.messages.where(sent: true).order('created_at DESC')
|
||||
@phenotype_comments = PhenotypeComment.where(user_id: @user.id).paginate(page: params[:page])
|
||||
@snp_comments = SnpComment.where(user_id: @user.id)
|
||||
|
||||
# get phenotypes that current_user did not enter yet
|
||||
@unentered_phenotypes = Phenotype.all - @user.phenotypes
|
||||
@@ -90,12 +90,12 @@ class UsersController < ApplicationController
|
||||
@user_snp_comment_ids = []
|
||||
@snp_comments.each do |sc| @user_snp_comment_ids << sc.id end
|
||||
@snp_comment_replies = []
|
||||
@user_snp_comment_ids.each do |ui|
|
||||
@user_snp_comment_ids.each do |ui|
|
||||
@replies_for_snp = SnpComment.where(reply_to_id: ui)
|
||||
@replies_for_snp.each do |rs|
|
||||
@snp_comment_replies << rs
|
||||
end
|
||||
end
|
||||
end
|
||||
@snp_comment_replies.sort! { |b,a| a.created_at <=> b.created_at }
|
||||
@paginated_snp_replies = @snp_comment_replies
|
||||
|
||||
@@ -152,21 +152,21 @@ class UsersController < ApplicationController
|
||||
flash[:notice] = "Successfully updated"
|
||||
|
||||
if params[:user][:password] or params[:user][:avatar]
|
||||
redirect_to :action => "edit", :id => current_user.id
|
||||
redirect_to action: 'edit', id: current_user.id
|
||||
else
|
||||
respond_to do |format|
|
||||
format.js
|
||||
format.html
|
||||
format.js
|
||||
format.html
|
||||
end
|
||||
end
|
||||
|
||||
else
|
||||
else
|
||||
|
||||
respond_to do |format|
|
||||
format.html do
|
||||
if request.xhr?
|
||||
flash[:warning] = "Oooops, something went wrong while editing your details"
|
||||
render :partial => "edit"
|
||||
flash[:warning] = 'Oooops, something went wrong while editing your details'
|
||||
render partial: 'edit'
|
||||
else
|
||||
render
|
||||
end
|
||||
@@ -185,10 +185,10 @@ class UsersController < ApplicationController
|
||||
@user_phenotype = UserPhenotype.find_by_phenotype_id(@phenotype.id)
|
||||
if @user_phenotype == nil
|
||||
# create user_phenotype if it doesn't exist
|
||||
@user_phenotype = UserPhenotype.create(:user_id => user_id, :variation => variation, :phenotype_id => @phenotype.id)
|
||||
@user_phenotype = UserPhenotype.create(user_id: user_id, variation: variation, phenotype_id: @phenotype.id)
|
||||
else
|
||||
# if user_phenotype exists, update
|
||||
@user_phenotype.update_attributes(:variation => variation)
|
||||
@user_phenotype.update_attributes(variation: variation)
|
||||
end
|
||||
end
|
||||
|
||||
@@ -199,7 +199,7 @@ class UsersController < ApplicationController
|
||||
ug.destroy
|
||||
end
|
||||
|
||||
flash[:notice] = "Thank you for using openSNP. Goodbye!"
|
||||
flash[:notice] = 'Thank you for using openSNP. Goodbye!'
|
||||
|
||||
# disconnect from fitbit if needed
|
||||
if @user.fitbit_profile != nil
|
||||
@@ -231,22 +231,22 @@ class UsersController < ApplicationController
|
||||
private
|
||||
|
||||
def sort_column
|
||||
User.column_names.include?(params[:sort]) ? params[:sort] : "name"
|
||||
User.column_names.include?(params[:sort]) ? params[:sort] : 'name'
|
||||
end
|
||||
|
||||
def sort_direction
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : "desc"
|
||||
%w[desc asc].include?(params[:direction]) ? params[:direction] : 'desc'
|
||||
end
|
||||
|
||||
def require_owner
|
||||
unless current_user == User.find(params[:id])
|
||||
store_location
|
||||
if current_user
|
||||
flash[:notice] = "Redirected to your edit page"
|
||||
redirect_to :controller => "users", :action => "edit", :id => current_user.id
|
||||
flash[:notice] = 'Redirected to your edit page'
|
||||
redirect_to controller: 'users', action: 'edit', id: current_user.id
|
||||
else
|
||||
flash[:notice] = "You need to be logged in"
|
||||
redirect_to "/signin"
|
||||
flash[:notice] = 'You need to be logged in'
|
||||
redirect_to '/signin'
|
||||
end
|
||||
return false
|
||||
end
|
||||
|
||||
@@ -1,103 +1,109 @@
|
||||
# frozen_string_literal: true
|
||||
class UserMailer < ActionMailer::Base
|
||||
default :from => "donotreply@opensnp.org"
|
||||
default from: 'donotreply@opensnp.org'
|
||||
|
||||
def password_reset_instructions(user)
|
||||
@user = user
|
||||
mail(:subject => "openSNP.org Password Reset Instructions", :to => user.email)
|
||||
end
|
||||
def password_reset_instructions(user)
|
||||
@user = user
|
||||
mail(subject: 'openSNP.org Password Reset Instructions', to: user.email)
|
||||
end
|
||||
|
||||
def welcome_user(user)
|
||||
@user = user
|
||||
mail(:subject => "Welcome to openSNP.org", :to => user.email)
|
||||
def welcome_user(user)
|
||||
@user = user
|
||||
mail(subject: 'Welcome to openSNP.org', to: user.email)
|
||||
end
|
||||
|
||||
def genotyping_results(target_address, link, phenotype_name, variation)
|
||||
@link = link
|
||||
@phenotype_name = phenotype_name
|
||||
@variation = variation
|
||||
mail(:subject => "openSNP.org: The data you requested is ready to be downloaded",:to => target_address)
|
||||
mail(subject: 'openSNP.org: The data you requested is ready to be downloaded',
|
||||
to: target_address)
|
||||
end
|
||||
|
||||
def no_genotyping_results(target_address, phenotype_name, variation)
|
||||
@phenotype_name = phenotype_name
|
||||
@variation = variation
|
||||
mail(:subject => "openSNP.org: No genotyping files match your search",:to => target_address)
|
||||
mail(subject: 'openSNP.org: No genotyping files match your search',
|
||||
to: target_address)
|
||||
end
|
||||
|
||||
def parsing_error(user_id)
|
||||
@user = User.find_by_id(user_id)
|
||||
mail(:subject => "openSNP.org: Something went wrong while parsing", :to=> @user.email)
|
||||
mail(subject: 'openSNP.org: Something went wrong while parsing', to: @user.email)
|
||||
end
|
||||
|
||||
def duplicate_file(user_id)
|
||||
@user = User.find_by_id(user_id)
|
||||
mail(:subject => "openSNP.org: You uploaded a duplicate genotyping", :to=> @user.email)
|
||||
mail(subject: 'openSNP.org: You uploaded a duplicate genotyping', to: @user.email)
|
||||
end
|
||||
|
||||
def file_has_mails(user_id)
|
||||
@user = User.find_by_id(user_id)
|
||||
mail(:subject => "openSNP.org: You uploaded a genotyping with email addresses", :to => @user.email)
|
||||
mail(subject: 'openSNP.org: You uploaded a genotyping with email addresses', to: @user.email)
|
||||
end
|
||||
|
||||
def new_message(user_id, message_id)
|
||||
@user = User.find_by_id(user_id)
|
||||
@message = Message.find_by_id(message_id)
|
||||
mail(:subject => "openSNP.org: You've got a new mail from #{User.find_by_id(@message.from_id).name}", :to => @user.email)
|
||||
mail(subject: "openSNP.org: You've got a new mail from #{User.find_by_id(@message.from_id).name}",
|
||||
to: @user.email)
|
||||
end
|
||||
|
||||
def new_snp_comment(snp_comment, to_user)
|
||||
@user = to_user
|
||||
@snp_comment = snp_comment
|
||||
mail(:subject => "openSNP.org: You've got a reply to one of your SNP-comments", :to => @user.email)
|
||||
mail(subject: 'openSNP.org: You have a reply to one of your SNP-comments', to: @user.email)
|
||||
end
|
||||
|
||||
def new_phenotype_comment(phenotype_comment, to_user)
|
||||
@user = to_user
|
||||
@phenotype_comment = phenotype_comment
|
||||
mail(:subject => "openSNP.org: You've got a reply to one of your phenotype-comments", :to => @user.email)
|
||||
mail(subject: 'openSNP.org: You have a reply to one of your phenotype-comments', to: @user.email)
|
||||
end
|
||||
|
||||
def new_picture_phenotype_comment(phenotype_comment, to_user)
|
||||
@user = to_user
|
||||
@phenotype_comment = phenotype_comment
|
||||
mail(:subject => "openSNP.org: You've got a reply to one of your phenotype-comments", :to => @user.email)
|
||||
mail(subject: 'openSNP.org: You have a reply to one of your phenotype-comments', to: @user.email)
|
||||
end
|
||||
|
||||
def new_phenotype(phenotype, user)
|
||||
@user = user
|
||||
@phenotype = phenotype
|
||||
mail(:subject => "openSNP.org: A new phenotype was entered on the platform", :to => @user.email)
|
||||
mail(subject: 'openSNP.org: A new phenotype was entered on the platform', to: @user.email)
|
||||
end
|
||||
|
||||
def newsletter(user)
|
||||
@user = user
|
||||
mail(:subject => "openSNP: The 2016 round-up and what's next", :to => @user.email)
|
||||
mail(subject: 'openSNP: The 2016 round-up and what\'s next', to: @user.email)
|
||||
end
|
||||
|
||||
def survey(user)
|
||||
@user = user
|
||||
delivery_options = { user_name: ENV.fetch('SURVEY_EMAIL_USER'),
|
||||
password: ENV.fetch('SURVEY_EMAIL_PASSWORD'),
|
||||
address: ENV.fetch('SURVEY_EMAIL_ADDRESS'),
|
||||
port: ENV.fetch('SURVEY_EMAIL_PORT') }
|
||||
mail(:subject => "openSNP: Read our survey results and meet Open Humans", :to => @user.email,:from => "survey@opensnp.org" ,delivery_method_options: delivery_options)
|
||||
end
|
||||
def survey(user)
|
||||
@user = user
|
||||
delivery_options = { user_name: ENV.fetch('SURVEY_EMAIL_USER'),
|
||||
password: ENV.fetch('SURVEY_EMAIL_PASSWORD'),
|
||||
address: ENV.fetch('SURVEY_EMAIL_ADDRESS'),
|
||||
port: ENV.fetch('SURVEY_EMAIL_PORT') }
|
||||
mail(subject: 'openSNP: Read our survey results and meet Open Humans',
|
||||
to: @user.email,
|
||||
from: 'survey@opensnp.org',
|
||||
delivery_method_options: delivery_options)
|
||||
end
|
||||
|
||||
def dump(target_address, link)
|
||||
@link = link
|
||||
mail(:subject => "openSNP.org: The data dump you requested is ready to be downloaded",:to => target_address)
|
||||
mail(subject: 'openSNP.org: The data dump you requested is ready to be downloaded',
|
||||
to: target_address)
|
||||
end
|
||||
|
||||
def no_dump(target_address)
|
||||
mail(:subject => "openSNP.org: Sorry, there is no data to be dumped.", :to => target_address)
|
||||
mail(subject: 'openSNP.org: Sorry, there is no data to be dumped', to: target_address)
|
||||
end
|
||||
|
||||
def fitbit_dump(link, user_id)
|
||||
@link = link
|
||||
@user = User.find(user_id)
|
||||
mail(:subject => "openSNP.org: The Fitbit-data you requested is now ready for download", :to => @user.email)
|
||||
puts "http://"+ActionMailer::Base.default_url_options[:host]+@link
|
||||
mail(subject: 'openSNP.org: The Fitbit-data you requested is now ready for download', to: @user.email)
|
||||
end
|
||||
|
||||
def finished_parsing(genotype_id, stats)
|
||||
|
||||
@@ -3,7 +3,7 @@ class FitbitActivity < ActiveRecord::Base
|
||||
belongs_to :fitbit_profile
|
||||
|
||||
def self.find_or_create_by_fitbit_profile_id_and_date_logged(fitbit_profile_id, date_logged)
|
||||
obj = self.find_by_fitbit_profile_id_and_date_logged( fitbit_profile_id, date_logged ) || self.new(:fitbit_profile_id => fitbit_profile_id, :date_logged => date_logged)
|
||||
obj = self.find_by_fitbit_profile_id_and_date_logged( fitbit_profile_id, date_logged ) || self.new(fitbit_profile_id: fitbit_profile_id, date_logged: date_logged)
|
||||
obj
|
||||
end
|
||||
|
||||
|
||||
@@ -3,7 +3,7 @@ class FitbitBody < ActiveRecord::Base
|
||||
belongs_to :fitbit_profile
|
||||
|
||||
def self.find_or_create_by_fitbit_profile_id_and_date_logged(fitbit_profile_id, date_logged)
|
||||
obj = self.find_by_fitbit_profile_id_and_date_logged( fitbit_profile_id, date_logged ) || self.new(:fitbit_profile_id => fitbit_profile_id, :date_logged => date_logged)
|
||||
obj = self.find_by_fitbit_profile_id_and_date_logged( fitbit_profile_id, date_logged ) || self.new(fitbit_profile_id: fitbit_profile_id, date_logged: date_logged)
|
||||
obj
|
||||
end
|
||||
|
||||
|
||||
@@ -3,7 +3,7 @@ class FitbitSleep < ActiveRecord::Base
|
||||
belongs_to :fitbit_profile
|
||||
|
||||
def self.find_or_create_by_fitbit_profile_id_and_date_logged(fitbit_profile_id, date_logged)
|
||||
obj = self.find_by_fitbit_profile_id_and_date_logged( fitbit_profile_id, date_logged ) || self.new(:fitbit_profile_id => fitbit_profile_id, :date_logged => date_logged)
|
||||
obj = self.find_by_fitbit_profile_id_and_date_logged( fitbit_profile_id, date_logged ) || self.new(fitbit_profile_id: fitbit_profile_id, date_logged: date_logged)
|
||||
obj
|
||||
end
|
||||
|
||||
|
||||
@@ -3,8 +3,8 @@ class Message < ActiveRecord::Base
|
||||
# from http://stackoverflow.com/questions/5141564/model-users-message-in-rails-3
|
||||
belongs_to :user
|
||||
|
||||
scope :sent, -> { where(:sent => true) }
|
||||
scope :received, -> { where(:sent => false) }
|
||||
scope :sent, -> { where(sent: true) }
|
||||
scope :received, -> { where(sent: false) }
|
||||
|
||||
# note: messages are cloned so that copies are kept on delete
|
||||
# change in Rails 3.1: .clone was replaced by .dup, .clone is only shallow copy
|
||||
@@ -21,6 +21,6 @@ class Message < ActiveRecord::Base
|
||||
if User.find_by_id(recipient).try(:message_on_message) == true
|
||||
UserMailer.new_message(recipient,msg.id).deliver_later
|
||||
end
|
||||
self.update_attributes :from_id => from, :sent => true, :to_id => recipient, :user_has_seen => true
|
||||
self.update_attributes from_id: from, sent: true, to_id: recipient, user_has_seen: true
|
||||
end
|
||||
end
|
||||
|
||||
@@ -5,13 +5,13 @@ class UserPicturePhenotype < ActiveRecord::Base
|
||||
belongs_to :picture_phenotype
|
||||
belongs_to :user
|
||||
|
||||
has_attached_file :phenotype_picture, :styles =>
|
||||
{ :maximum => "1000x1000>", :medium => "300x300>", :thumb => "100x100>#",
|
||||
:head => "32x32#" },
|
||||
:default_url => '/images/standard_picture_phenotype_:style.png'
|
||||
validates_attachment_size :phenotype_picture, :less_than => 1.megabyte
|
||||
has_attached_file :phenotype_picture, styles:
|
||||
{ maximum: "1000x1000>", medium: "300x300>", thumb: "100x100>#",
|
||||
head: "32x32#" },
|
||||
default_url: '/images/standard_picture_phenotype_:style.png'
|
||||
validates_attachment_size :phenotype_picture, less_than: 1.megabyte
|
||||
validates_attachment_content_type :phenotype_picture ,
|
||||
:content_type => ['image/jpeg', 'image/png', 'image/gif']
|
||||
content_type: ['image/jpeg', 'image/png', 'image/gif']
|
||||
|
||||
pg_search_common_scope against: :picture_phenotype_id
|
||||
|
||||
|
||||
@@ -1,21 +1,28 @@
|
||||
<h3>Achievement: <%=@achievement.award%> <%=image_tag("achievements/#{@achievement.short_name}_80px.png",:style => "vertical-align:middle",:height=>"70",:alt => @achievement.award)%></h3>
|
||||
|
||||
<h6>Statistics</h6>
|
||||
<%=((@achievement.user_achievements.length.to_f / User.all.count)*100).to_s[0,5]%> % of all users received this achievement.
|
||||
<h6>Users who received this achievement</h6>
|
||||
<table class="table table-striped">
|
||||
<tr>
|
||||
<th>Number</th>
|
||||
<th>User</th>
|
||||
<th>Received on</th>
|
||||
</tr>
|
||||
<%@achievement.user_achievements.each do |ua|%>
|
||||
<% if ua.user %>
|
||||
<div class="general__container container clearfix">
|
||||
<%=image_tag("achievements/#{@achievement.short_name}_80px.png", :alt => @achievement.award, class: "achievements__image")%>
|
||||
<h3>Achievement: <%=@achievement.award%> </h3>
|
||||
<%=((@achievement.user_achievements.length.to_f / User.all.count)*100).to_s[0,5]%> % of all users received this achievement.
|
||||
<div class="well achievements__table">
|
||||
<h4 class="achievements__table-title">Users who received this achievement</h4>
|
||||
<div class="table-responsive">
|
||||
<table class="table table-hover">
|
||||
<thead>
|
||||
<tr>
|
||||
<th>User</th>
|
||||
<th>Number</th>
|
||||
<th>Received on</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<%@achievement.user_achievements.each do |ua|%>
|
||||
<% if ua.user %>
|
||||
<tr>
|
||||
<td><%= ua.id %></td>
|
||||
<td><%= link_to ua.user.name, ua.user %></td>
|
||||
<td><%= ua.created_at %></td>
|
||||
<td class="table-cell vertical-centered"><%= link_to(image_tag(ua.user.avatar.url(:thumb), class: "img-circle", width: "32px") + " #{ua.user.name}", ua.user) %></td>
|
||||
<td class="table-cell vertical-centered"><%= ua.id %></td>
|
||||
<td class="table-cell vertical-centered"><%= ua.created_at %></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
<%end%>
|
||||
</table>
|
||||
<% end %>
|
||||
<% end %>
|
||||
</table>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,34 +1,25 @@
|
||||
<h1><em>Fitbit</em> Settings</h1>
|
||||
<h3 class="general__title">Fitbit Settings</h3>
|
||||
|
||||
<div class="row">
|
||||
<div class="span6">
|
||||
<%= form_for @fitbit_profile, :url => fitbit_update_path, :method => :post, :html => {:class => "form-horizontal"} do |f|%>
|
||||
<h5> For which categories should we save data?</h5>
|
||||
<div class="fitbit__explaination">
|
||||
<p>We will save data from three different categories: <strong>Body</strong>, <strong>Activities</strong> and <strong>Sleep</strong>.</p>
|
||||
<p>For the <strong>Body</strong> category, we will save your Body Mass Index (BMI) and your weight (unfortunately there's currently no option to get your height through <em>Fitbit</em> but you can calculate it through BMI and weight).</p>
|
||||
<p>For <strong>Sleep</strong>, we will save how long you have slept and how frequently you awoke, how long you've been awake and how long it took you to fall asleep.</p>
|
||||
<p>For <strong>Activities</strong>, we will save how many steps you have taken and how many floors you have climbed.</p><p>We'll also try to save the historical data <em>Fitbit</em> has collected prior to your connecting the device with <em>openSNP</em>. You can decide which categories we should save. So, if you feel comfortable sharing your activities but neither weight nor sleep information, that's no problem.</p>
|
||||
</div>
|
||||
|
||||
<div class="fitbit__options">
|
||||
<%= form_for @fitbit_profile, :url => fitbit_update_path, :method => :post, :html => {:class => "fitbit__form"} do |f|%>
|
||||
<h4> For which categories should we save data?</h4>
|
||||
<%= f.error_messages %>
|
||||
<%= f.check_box :body %> Body (Weight and Body Mass Index)<br />
|
||||
<%= f.check_box :activities %> Activities (Steps taken and Floors climbed)<br />
|
||||
<%= f.check_box :sleep %> Sleep (Duration, times awoken, time until asleep, length of wake-phases)<br />
|
||||
<%= f.hidden_field :id, :value => @fitbit_profile.id %>
|
||||
<br />
|
||||
<div class="alert alert-info">
|
||||
If you decide to uncheck some of the categories, all data that have been saved so far will be deleted.
|
||||
</div>
|
||||
<%= f.submit "Save Fitbit-Settings", {:class=>"btn btn-info"}%>
|
||||
<% end %>
|
||||
|
||||
<div class="alert alert-warning">
|
||||
If you remove your <em>Fitbit</em> account, we will stop grabbing new data and remove all the data that were already saved.
|
||||
</div>
|
||||
|
||||
<%=link_to("Remove Fitbit account",{:controller => "fitbit_profiles", :action => "destroy"},:class => "btn btn-danger")%>
|
||||
|
||||
</div>
|
||||
<div class="span6">
|
||||
<p>We will save data from three different categories: <strong>Body</strong>, <strong>Activities</strong> and <strong>Sleep</strong>.</p>
|
||||
<p>For the <strong>Body</strong> category, we will save your Body Mass Index (BMI) and your weight (unfortunately there's currently no option to get your height through <em>Fitbit</em> but you can calculate it through BMI and weight).</p>
|
||||
<p>For <strong>Sleep</strong>, we will save how long you have slept and how frequently you awoke, how long you've been awake and how long it took you to fall asleep.</p>
|
||||
<p>For <strong>Activities</strong>, we will save how many steps you have taken and how many floors you have climbed.</p><p>We'll also try to save the historical data <em>Fitbit</em> has collected prior to your connecting the device with <em>openSNP</em>. You can decide which categories we should save. So, if you feel comfortable sharing your activities but neither weight nor sleep information, that's no problem.</p>
|
||||
|
||||
|
||||
</div>
|
||||
|
||||
<%= f.submit "Save Fitbit-Settings", {:class=>"btn btn-info fitbit__form-submit-button"}%>
|
||||
<small><br>If you decide to uncheck some of the categories, all data that have been saved so far will be deleted.</small>
|
||||
<% end %>
|
||||
|
||||
<%=link_to("Remove Fitbit account",{:controller => "fitbit_profiles", :action => "destroy"},:class => "btn btn-danger")%>
|
||||
<small><br>If you remove your <em>Fitbit</em> account, we will stop grabbing new data and remove all the data that were already saved.</small>
|
||||
</div>
|
||||
|
||||
@@ -1 +1,3 @@
|
||||
<%=render "form"%>
|
||||
<div class="general__container">
|
||||
<%=render "form"%>
|
||||
</div>
|
||||
|
||||
@@ -1,42 +1,43 @@
|
||||
<legend><%=image_tag("fitbit-icon.png")%> Listing all connected <em><%=link_to("Fitbit",{:controller => "fitbit_profiles",:action => "info"},:rel => "tooltip", :title => "Want to learn more about our Fitbit-integration? Click here")%></em> accounts </legend>
|
||||
|
||||
<h4>
|
||||
<%= link_to(Zipfulldata.public_path, title: "Request download") do %>
|
||||
<%= image_tag("filedownload_small.png", style: "vertical-align:middle") %>
|
||||
Download the dump: Includes all genotyping files plus a CSV with all phenotypes of those users <%= Zipfulldata.gb_size %>
|
||||
<% end %>
|
||||
</h4>
|
||||
<br/>
|
||||
<h4><a href="https://github.com/superbobry/snpy">Python-library to parse the provided files</a>, courtesy of <a href="https://github.com/superbobry/">Sergei Lebedev</a></h4>
|
||||
<br/>
|
||||
<table class="table table-striped" id="all_fitbit">
|
||||
<tr>
|
||||
<th>#</th>
|
||||
<th><%= sortable "fitbit_user_id", "Fitbit ID"%></th>
|
||||
<th>User</th>
|
||||
<th><%= sortable "activities", "Shares Activities"%></th>
|
||||
<th><%= sortable "body", "Shares Body Data"%></th>
|
||||
<th><%= sortable "sleep", "Shares Sleep Data"%></th>
|
||||
<th>View Profile</th>
|
||||
</tr>
|
||||
<% @fitbit_profiles.each_with_index do |fitbit_profile, i| %>
|
||||
<tr>
|
||||
<td><%= table_row_sequence_number(@fitbit_profiles, i) %></td>
|
||||
<td><%= link_to(fitbit_profile.fitbit_user_id, {:controller => "fitbit_profiles", :action => "show", :id => fitbit_profile.id}) %></td>
|
||||
<td><%=image_tag fitbit_profile.user.avatar.url(:head),:style => "vertical-align:middle"%><%= link_to(fitbit_profile.user.name, fitbit_profile.user)%></td>
|
||||
<td><%if fitbit_profile.activities == true%><i class="icon-ok"></i><%else%><i class="icon-remove"></i><%end%></td>
|
||||
<td><%if fitbit_profile.body == true%><i class="icon-ok"></i><%else%><i class="icon-remove"></i><%end%></td>
|
||||
<td><%if fitbit_profile.sleep == true%><i class="icon-ok"></i><%else%><i class="icon-remove"></i><%end%></td>
|
||||
<td><%= link_to("view", {:controller => "fitbit_profiles", :action => "show", :id => fitbit_profile.id})%></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
</table>
|
||||
|
||||
<%= page_navigation_links @fitbit_profiles %>
|
||||
|
||||
<script type="text/javascript">
|
||||
$(document).ready(function () {
|
||||
$("[rel=tooltip]").tooltip({placement:'left'});
|
||||
});
|
||||
</script>
|
||||
|
||||
<div class="general__container">
|
||||
<div class="row">
|
||||
<div class="col-md-6">
|
||||
<h3><%=image_tag("fitbit-icon.png")%> Listing all connected <em><%=link_to("Fitbit",{:controller => "fitbit_profiles",:action => "info"},:rel => "tooltip", :title => "Want to learn more about our Fitbit-integration? Click here")%></em> accounts </h3>
|
||||
<h4><a href="https://github.com/superbobry/snpy">Python-library to parse the provided files,</a> courtesy of <a href="https://github.com/superbobry/">Sergei Lebedev</a></h4>
|
||||
</div>
|
||||
<div class="fitbit__download-container col-md-6 ">
|
||||
<%= link_to Zipfulldata.public_path, title: "Request download", class: "btn btn-default center-block fitbit__download-button" do %>
|
||||
Download dump
|
||||
<% end %>
|
||||
<p class="text-center fitbit__text-download">Includes all genotyping files plus a CSV with all phenotypes of those users</p>
|
||||
</div>
|
||||
</div>
|
||||
<div class="table-responsive">
|
||||
<table class="table table-hover snps__table" id="all_fitbit">
|
||||
<thead>
|
||||
<tr>
|
||||
<th>User</th>
|
||||
<th>#</th>
|
||||
<th><%= sortable "fitbit_user_id", "Fitbit ID"%></th>
|
||||
<th><%= sortable "activities", "Shares Activities"%></th>
|
||||
<th><%= sortable "body", "Shares Body Data"%></th>
|
||||
<th><%= sortable "sleep", "Shares Sleep Data"%></th>
|
||||
<th>View Profile</th>
|
||||
</tr>
|
||||
</thead>
|
||||
<% @fitbit_profiles.each_with_index do |fitbit_profile, i| %>
|
||||
<tr>
|
||||
<td class="table-cell vertical-centered"><%= link_to(image_tag(fitbit_profile.user.avatar.url(:head), :class => "img-circle", :width => "50px") + " #{fitbit_profile.user.name}", fitbit_profile.user) %></td>
|
||||
<td class="table-cell vertical-centered"><%= table_row_sequence_number(@fitbit_profiles, i) %></td>
|
||||
<td class="table-cell vertical-centered"><%= link_to(fitbit_profile.fitbit_user_id, {:controller => "fitbit_profiles", :action => "show", :id => fitbit_profile.id}) %></td>
|
||||
<td class="table-cell vertical-centered"><%if fitbit_profile.activities == true%><i class="icon-ok"></i><%else%><i class="icon-remove"></i><%end%></td>
|
||||
<td class="table-cell vertical-centered"><%if fitbit_profile.body == true%><i class="icon-ok"></i><%else%><i class="icon-remove"></i><%end%></td>
|
||||
<td class="table-cell vertical-centered"><%if fitbit_profile.sleep == true%><i class="icon-ok"></i><%else%><i class="icon-remove"></i><%end%></td>
|
||||
<td class="table-cell vertical-centered"><%= link_to("View", {:controller => "fitbit_profiles", :action => "show", :id => fitbit_profile.id}, class: "btn btn-default")%></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
</table>
|
||||
<div class="text-center">
|
||||
<%= will_paginate @fitbit_profiles, renderer: BootstrapPagination::Rails%>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,13 +1,24 @@
|
||||
<legend>Connect your <%=image_tag("fitbit_logo_dark_100px.png")%> account to openSNP</legend>
|
||||
<p class="lead"><em><a href="http://www.fitbit.com">Fitbit</a></em> is a wearable gadget which allows you to track your activities (How many steps have you taken? How many floors have you climbed?), your sleep (How long did you sleep? How often were you awoken at night?) and also allows you to track your body-development (i.e. your weight/BMI). The data collected by and through your <em>Fitbit</em> is a valuable extension of the phenotypes you've already entered into openSNP.</p>
|
||||
<div class="general__container">
|
||||
<h3 class="general__title">Connect your <%=image_tag("fitbit_logo_dark_100px.png")%> account to openSNP</h3>
|
||||
<p class="lead">
|
||||
<em><a href="http://www.fitbit.com">Fitbit</a></em> is a wearable gadget which allows you to track your activities (How many steps have you taken? How many floors have you climbed?), your sleep (How long did you sleep? How often were you awoken at night?) and also allows you to track your body-development (i.e. your weight/BMI). The data collected by and through your <em>Fitbit</em> is a valuable extension of the phenotypes you've already entered into openSNP.
|
||||
</p>
|
||||
<p class="lead">
|
||||
Once you've connected your <em>Fitbit</em> account to openSNP, we will automatically get your latest data from <em>Fitbit</em>. Each time you sync your <em>Fitbit</em> tracker or enter new data on <em>Fitbit</em> the changes will also appear on openSNP. Currently we save data about your activities, your body and your sleep.
|
||||
</p>
|
||||
<p class="lead">
|
||||
The data will be public on the openSNP website, like all other phenotypes. However, you can decide which categories to connect with openSNP and which to not.
|
||||
</p>
|
||||
|
||||
<p class="lead">Once you've connected your <em>Fitbit</em> account to openSNP, we will automatically get your latest data from <em>Fitbit</em>. Each time you sync your <em>Fitbit</em> tracker or enter new data on <em>Fitbit</em> the changes will also appear on openSNP. Currently we save data about your activities, your body and your sleep.</p>
|
||||
<%if current_user != nil%>
|
||||
<h4><%=link_to("Connect your Fitbit account with openSNP",{:controller => "fitbit_profiles", :action => "start_auth"},:class => "btn btn-info")%></h4>
|
||||
<%else%>
|
||||
<p class="lead">
|
||||
<%=link_to("Sign in", '/signin')%> to openSNP to connect your <em>Fitbit</em> account with us.
|
||||
</p>
|
||||
<%end%>
|
||||
<small>
|
||||
You want to learn more about the integration of <em>Fitbit</em> into openSNP or have a question? <%=link_to("Have a look at the FAQ.","/faq#enteringphenotypes")%>
|
||||
</small>
|
||||
|
||||
<p class="lead">The data will be public on the openSNP website, like all other phenotypes. However, you can decide which categories to connect with openSNP and which to not.</p>
|
||||
|
||||
<%if current_user != nil%>
|
||||
<h4><%=link_to("Connect your Fitbit account with openSNP",{:controller => "fitbit_profiles", :action => "start_auth"},:class => "btn btn-info")%></h4>
|
||||
<%else%>
|
||||
<p class="lead"><%=link_to("Sign in", '/signin')%> to openSNP to connect your <em>Fitbit</em> account with us.</p>
|
||||
<%end%>
|
||||
You want to learn more about the integration of <em>Fitbit</em> into openSNP or have a question? <%=link_to("Have a look at the FAQ.","/faq#enteringphenotypes")%>
|
||||
</div>
|
||||
|
||||
@@ -1,11 +1,12 @@
|
||||
<legend><%=image_tag("fitbit-icon.png",:style => "vertical-align:middle")%> <em><%=link_to("Fitbit",{:controller => "fitbit_profiles",:action => "info"},:rel => "tooltip", :title => "Want to learn more about our Fitbit-integration? Click here")%></em> profile for <%= link_to(@fitbit_profile.user.name, @fitbit_profile.user)%></legend>
|
||||
<%if current_user%>
|
||||
<p class="lead"><%=link_to(image_tag("filedownload_small.png",:style => "vertical-align:middle"),{:controller => "fitbit_profiles", :action => "dump", :id => @fitbit_profile.id})%> <%=link_to("Download a dump of the data",{:controller => "fitbit_profiles", :action => "dump", :id => @fitbit_profile.id})%></p>
|
||||
<%else%>
|
||||
<p class="lead">If you log in to <em>openSNP</em>, you can download a CSV file with all the data.</p>
|
||||
<%end%>
|
||||
<div class="general__container">
|
||||
<h3 class="general__title"><%=image_tag("fitbit-icon.png")%> <em><%=link_to("Fitbit",{:controller => "fitbit_profiles",:action => "info"}, :data => { :toggle => "tooltip", :placement => "bottom"}, :title => "Want to learn more about our Fitbit-integration? Click here")%></em> profile for <%= link_to(@fitbit_profile.user.name, @fitbit_profile.user)%></h3>
|
||||
<%if current_user%>
|
||||
<p class="lead"><%=link_to("Download dump",{:controller => "fitbit_profiles", :action => "dump", :id => @fitbit_profile.id}, class: "btn btn-default")%></p>
|
||||
<%else%>
|
||||
<p class="lead">If you log in to <em>openSNP</em>, you can download a CSV file with all the data.</p>
|
||||
<%end%>
|
||||
|
||||
<%if @activity != nil%>
|
||||
<%if @activity != nil%>
|
||||
<legend>Activity Measurements</legend>
|
||||
<script type="text/javascript">
|
||||
$(document).ready(function(){
|
||||
@@ -13,217 +14,218 @@
|
||||
var steps=<%=raw(@steps.to_json)%>;
|
||||
var floors=<%=raw(@floors.to_json)%>;
|
||||
var plot1 = $.jqplot('chart1', [floors,steps], {
|
||||
title:'Activity per Day (Mean steps/day: <%=@mean_steps%>)',
|
||||
series:[{label:'Floors' ,yaxis:'y2axis',fill: true,fillAlpha: 0.8,highlightMouseOver: false}, {label:'Steps'}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i steps'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i floors'
|
||||
},
|
||||
title:'Activity per Day (Mean steps/day: <%=@mean_steps%>)',
|
||||
series:[{label:'Floors' ,yaxis:'y2axis',fill: true,fillAlpha: 0.8,highlightMouseOver: false}, {label:'Steps'}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i steps'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i floors'
|
||||
},
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
});
|
||||
// Sum Activity Graph
|
||||
var total_steps=<%=raw(@total_steps.to_json)%>;
|
||||
var total_floors=<%=raw(@total_floors.to_json)%>;
|
||||
var plot2 = $.jqplot('chart2', [total_floors,total_steps], {
|
||||
title:'Sum of Activity',
|
||||
series:[{label:"Floors",yaxis:'y2axis',fill:true,fillAlpha:0.5},{label:'Steps',fill:true,fillAlpha:0.5}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i steps'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i floors'
|
||||
},
|
||||
title:'Sum of Activity',
|
||||
series:[{label:"Floors",yaxis:'y2axis',fill:true,fillAlpha:0.5},{label:'Steps',fill:true,fillAlpha:0.5}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i steps'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i floors'
|
||||
},
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
});
|
||||
});
|
||||
</script>
|
||||
<div id="chart1"></div>
|
||||
<div id="chart2"></div>
|
||||
</script>
|
||||
<div id="chart1"></div>
|
||||
<div id="chart2"></div>
|
||||
<%end%>
|
||||
|
||||
<%if @body and @body != [] %>
|
||||
<legend>Body Measurements</legend>
|
||||
<script type="text/javascript">
|
||||
<legend>Body Measurements</legend>
|
||||
<script type="text/javascript">
|
||||
$(document).ready(function(){
|
||||
// BMI Graph
|
||||
var bmi=<%=raw(@bmi.to_json)%>;
|
||||
var plot3 = $.jqplot('chart3', [bmi], {
|
||||
title:'BMI per Day',
|
||||
series:[{label:'Body Mass Index',fill:true}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%.2f BMI'
|
||||
}
|
||||
},
|
||||
title:'BMI per Day',
|
||||
series:[{label:'Body Mass Index',fill:true}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
axesDefaults: {
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%.2f BMI'
|
||||
}
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
},
|
||||
axesDefaults: {
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
});
|
||||
});
|
||||
</script>
|
||||
<div id="chart3"></div>
|
||||
</script>
|
||||
<div id="chart3"></div>
|
||||
<%end%>
|
||||
|
||||
<%if @sleep and @sleep != [] %>
|
||||
<legend>Sleep Measurements</legend>
|
||||
<script type="text/javascript">
|
||||
<legend>Sleep Measurements</legend>
|
||||
<script type="text/javascript">
|
||||
$(document).ready(function(){
|
||||
// Activity Graph
|
||||
var minutes_asleep=<%=raw(@minutes_asleep.to_json)%>;
|
||||
var minutes_to_sleep=<%=raw(@minutes_to_sleep.to_json)%>;
|
||||
var awakenings=<%=raw(@awakenings.to_json)%>;
|
||||
var plot4 = $.jqplot('chart4', [awakenings,minutes_asleep,minutes_to_sleep], {
|
||||
title:'Sleep per Day (Mean sleep/day: <%=@mean_sleep%> minutes)',
|
||||
series:[{label:'# awaken' ,yaxis:'y2axis',fill: true,highlightMouseOver: false}, {label:'Minutes asleep'},{label: 'Minutes awake',fill:true}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i minutes'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i times awoken'
|
||||
},
|
||||
title:'Sleep per Day (Mean sleep/day: <%=@mean_sleep%> minutes)',
|
||||
series:[{label:'# awaken' ,yaxis:'y2axis',fill: true,highlightMouseOver: false}, {label:'Minutes asleep'},{label: 'Minutes awake',fill:true}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i minutes'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i times awoken'
|
||||
},
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
});
|
||||
// Sum Activity Graph
|
||||
var total_minutes_asleep=<%=raw(@total_minutes_asleep.to_json)%>;
|
||||
var total_minutes_to_sleep=<%=raw(@total_minutes_to_sleep.to_json)%>;
|
||||
var plot5 = $.jqplot('chart5', [total_minutes_asleep,total_minutes_to_sleep], {
|
||||
title:'Sum of Sleep',
|
||||
series:[{label:'minutes asleep',fill:true,fillAlpha:0.5},{label:"minutes falling asleep",yaxis:'y2axis',fill:true,fillAlpha:0.6}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i min (asleep)'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i min (falling asleep)'
|
||||
},
|
||||
title:'Sum of Sleep',
|
||||
series:[{label:'minutes asleep',fill:true,fillAlpha:0.5},{label:"minutes falling asleep",yaxis:'y2axis',fill:true,fillAlpha:0.6}],
|
||||
axes:{
|
||||
xaxis:{
|
||||
renderer:$.jqplot.DateAxisRenderer,
|
||||
tickOptions:{
|
||||
formatString:'%b %#d'
|
||||
}
|
||||
},
|
||||
yaxis:{
|
||||
tickOptions:{
|
||||
formatString:'%i min (asleep)'
|
||||
}
|
||||
},
|
||||
y2axis:{
|
||||
tickOptions:{
|
||||
formatString:'%i min (falling asleep)'
|
||||
},
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
},
|
||||
axesDefaults: {
|
||||
pad: 0
|
||||
},
|
||||
legend: {
|
||||
show: true,
|
||||
placement: 'outsideGrid'
|
||||
},
|
||||
highlighter: {
|
||||
show: true,
|
||||
sizeAdjust: 7.5
|
||||
},
|
||||
cursor: {
|
||||
show: false
|
||||
}
|
||||
});
|
||||
});
|
||||
</script>
|
||||
<div id="chart4"></div>
|
||||
<div id="chart5"></div>
|
||||
</script>
|
||||
<div id="chart4"></div>
|
||||
<div id="chart5"></div>
|
||||
<%end%>
|
||||
<script type="text/javascript">
|
||||
$(document).ready(function () {
|
||||
$("[rel=tooltip]").tooltip({placement:'right'});
|
||||
});
|
||||
</script>
|
||||
</div>
|
||||
|
||||
@@ -1,44 +1,50 @@
|
||||
<div class="row">
|
||||
<div class="span6 columns">
|
||||
<%= form_for(@genotype, html: {class: "form-horizontal", multipart: true}) do |f| %>
|
||||
<%= render 'shared/error_messages', :target => @genotype %>
|
||||
<div class="well">
|
||||
<h5>Provide your genotyping file</h5>
|
||||
<p>Zipped genotypings are fine too.</p>
|
||||
<p><%= f.file_field :genotype %></p>
|
||||
<%= f.label :filetype %>
|
||||
<div class="radio">
|
||||
<%= f.radio_button :filetype,"23andme" %>
|
||||
23andme-format
|
||||
</div>
|
||||
<div class="radio">
|
||||
<%= f.radio_button :filetype,"genes-for-good"%>
|
||||
Genes for Good-format
|
||||
</div>
|
||||
<div class="radio">
|
||||
<%= f.radio_button :filetype,"ftdna-illumina"%>
|
||||
FamilyTreeDNA, Illumina-Format
|
||||
</div>
|
||||
<div class="radio">
|
||||
<%= f.radio_button :filetype,"ancestry"%>
|
||||
AncestryDNA data
|
||||
</div>
|
||||
<div class="radio">
|
||||
<%= f.radio_button :filetype,"23andme-exome-vcf"%>
|
||||
23andMe-EXOME, VCF-format
|
||||
</div>
|
||||
<div class="radio">
|
||||
<%= f.radio_button :filetype,"IYG"%>
|
||||
IYG-format (EBI genotyping participants)
|
||||
</div>
|
||||
<div class="radio">
|
||||
<%= f.radio_button :filetype,"decodeme"%>
|
||||
deCODEme-format
|
||||
</div>
|
||||
<br/>Not sure which type to choose? Take a look at our <%=link_to("FAQ","/faq#filetypes")%>.<br/><br/>
|
||||
<%= f.submit "Upload", :class => "btn btn-primary" %>
|
||||
<% end %>
|
||||
</div>
|
||||
</div>
|
||||
<div class="span6"><div class="well"><%=render "static/disclaimer"%></div></div>
|
||||
<div class="col-md-7 well new-genotype__disclaimer">=
|
||||
<%=render "static/disclaimer"%>
|
||||
</div>
|
||||
<div class="col-md-4 col-md-offset-1 well new-genotype__form">
|
||||
<%= form_for(@genotype) do |f| %>
|
||||
<h3>Provide your genotyping file</h3>
|
||||
<small class="help-block">Zipped genotypings are fine too.</small>
|
||||
<%= f.file_field :genotype %>
|
||||
</br>
|
||||
<%= f.label :filetype %>
|
||||
<div class="radio">
|
||||
<label for="">
|
||||
<%= f.radio_button :filetype,"23andme" %>
|
||||
23andme-format
|
||||
</label>
|
||||
</div>
|
||||
<div class="radio">
|
||||
<label for="">
|
||||
<%= f.radio_button :filetype,"decodeme"%>
|
||||
deCODEme-format
|
||||
</label>
|
||||
</div>
|
||||
<div class="radio">
|
||||
<label for="">
|
||||
<%= f.radio_button :filetype,"ftdna-illumina"%>
|
||||
FamilyTreeDNA, Illumina-Format
|
||||
</label>
|
||||
</div>
|
||||
<div class="radio">
|
||||
<label for="">
|
||||
<%= f.radio_button :filetype,"ancestry"%>
|
||||
AncestryDNA data
|
||||
</label>
|
||||
</div>
|
||||
<div class="radio">
|
||||
<label for="">
|
||||
<%= f.radio_button :filetype,"23andme-exome-vcf"%>
|
||||
23andMe-EXOME, VCF-format
|
||||
</label>
|
||||
</div>
|
||||
<div class="radio">
|
||||
<label for="">
|
||||
<%= f.radio_button :filetype,"IYG"%>
|
||||
IYG-format (EBI genotyping participants)
|
||||
</label>
|
||||
</div>
|
||||
<br/>Not sure which type to choose? Take a look at our <%=link_to("FAQ","/faq#filetypes")%>.<br/><br/>
|
||||
<%= f.submit "Upload", :class => "btn btn-primary" %>
|
||||
<% end %>
|
||||
</div>
|
||||
|
||||
@@ -1,34 +1,44 @@
|
||||
<legend>Listing all genotypes
|
||||
<%=link_to(image_tag("rss_small.png"),"/rss")%>
|
||||
</legend>
|
||||
|
||||
<%=auto_discovery_link_tag(:rss,"/rss", {:title => "RSS for all genotypes"})%>
|
||||
|
||||
<h4>
|
||||
<%= link_to(Zipfulldata.public_path, title: "Request download") do %>
|
||||
<%= image_tag("filedownload_small.png", style: "vertical-align:middle") %>
|
||||
Download the dump: Includes all genotyping files plus a CSV with all phenotypes of those users <%= Zipfulldata.gb_size %>
|
||||
<% end %>
|
||||
</h4>
|
||||
</br>
|
||||
<h4><a href="https://github.com/superbobry/snpy">Python library to parse the provided files</a>, courtesy of <a href="https://github.com/superbobry/">Sergei Lebedev</a></h4>
|
||||
<br/>
|
||||
<table class="table table-striped" id="all_genotypes">
|
||||
<tr>
|
||||
<th><%= sortable "id", "ID"%></th>
|
||||
<th>User</th>
|
||||
<th><%= sortable "filetype", "Type"%></th>
|
||||
<th><%= sortable "created_at", "Created"%></th>
|
||||
<th>Download</th>
|
||||
</tr>
|
||||
<% @genotypes_paginate.each do |g| %>
|
||||
<tr>
|
||||
<td><%= g.id %></td>
|
||||
<td><%=image_tag g.user.avatar.url(:head),:style => "vertical-align:middle"%> <%= link_to(g.user.name, g.user)%></td>
|
||||
<td><%= g.filetype %></td>
|
||||
<td><%= g.created_at%></td>
|
||||
<td><%= link_to "Right-click and 'Save as..'", '../data/' + g.fs_filename %></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
</table>
|
||||
<%= page_navigation_links @genotypes_paginate %>
|
||||
<div class="general__container container">
|
||||
<div class="row">
|
||||
<div class="col-md-6">
|
||||
<h3>All Genotypes <%=link_to(image_tag("rss.png"),"/rss")%></h3>
|
||||
<%=auto_discovery_link_tag(:rss,"/rss", {:title => "RSS for all genotypes"})%>
|
||||
<h4><a href="https://github.com/superbobry/snpy">Python library to parse the provided files,</a> courtesy of <a href="https://github.com/superbobry/">Sergei Lebedev</a></h4>
|
||||
</div>
|
||||
<div class="genotype__download-container col-md-6 ">
|
||||
<%= link_to Zipfulldata.public_path, title: "Request download", class: "btn btn-default center-block genotype__download-button" do %>
|
||||
Download dump
|
||||
<% end %>
|
||||
<p class="text-center genotype__text-download">Includes all genotyping files plus a CSV with all phenotypes of those users</p>
|
||||
</div>
|
||||
</div>
|
||||
<div class="table-responsive genotype__table">
|
||||
<table class="table table-hover" id="all_genotypes">
|
||||
<thead>
|
||||
<tr>
|
||||
<th>User</th>
|
||||
<th>#</th>
|
||||
<th><%= sortable "id", "ID"%></th>
|
||||
<th><%= sortable "created_at", "Created"%></th>
|
||||
<th><%= sortable "filetype", "Type"%></th>
|
||||
<th></th>
|
||||
</tr>
|
||||
</thead>
|
||||
<% @genotypes_paginate.each do |g| %>
|
||||
<tr>
|
||||
<td class="table-cell vertical-centered">
|
||||
<%= link_to(image_tag(g.user.avatar.url(:head), :class => "img-circle", :width => "50px") + " #{g.user.name}", g.user) %>
|
||||
</td>
|
||||
<td class="table-cell vertical-centered"><%= Genotype.all.sort { |a,b| a.id <=> b.id }.index(g) + 1 %></td>
|
||||
<td class="table-cell vertical-centered"><%= g.id %></td>
|
||||
<td class="table-cell vertical-centered"><%= g.created_at%></td>
|
||||
<td class="table-cell vertical-centered"><%= g.filetype %></td>
|
||||
<td class="table-cell vertical-centered"><%= link_to "Download", '../data/' + g.fs_filename, class: "btn btn-default" %></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
</table>
|
||||
</div>
|
||||
<div class="text-center">
|
||||
<%= will_paginate @genotypes_paginate, renderer: BootstrapPagination::Rails%>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,5 +1,13 @@
|
||||
<legend>Upload Genotyping-File</legend>
|
||||
<%= render 'shared/warning' %>
|
||||
<%= render 'form' %>
|
||||
|
||||
<%= link_to "Back to your homepage", current_user %>
|
||||
<%= render 'shared/error_messages', :target => @genotype %>
|
||||
<div class="general__container container">
|
||||
<div class="row">
|
||||
<h3 class="general__title">Upload Genotyping file</h3>
|
||||
<%= render 'shared/warning' %>
|
||||
</div>
|
||||
<div class="row">
|
||||
<%= render 'form' %>
|
||||
</div>
|
||||
<div class="row">
|
||||
<%= link_to "Back to your homepage", current_user, class: "btn btn-default new-genotype__back-home-button" %>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,5 +1,9 @@
|
||||
<h1><%=@user.name%>'s genotype</h1>
|
||||
<div class="general__container container text-center">
|
||||
<h1 class="general__title"><%=@user.name%>'s genotype</h1>
|
||||
|
||||
<p>Originally uploaded on: <%= @genotype.created_at %></p>
|
||||
<div class="well phenotype__download-area">
|
||||
<p class="phenotype__upload-date">Originally uploaded on: <%= @genotype.created_at %></p>
|
||||
|
||||
<p>Download this set: <%= link_to "Right-click and 'Save as...'", '../data/' + @genotype.fs_filename %> </p>
|
||||
<p><%= link_to "Download this set", '../data/' + @genotype.fs_filename, class: "btn btn-primary phenotype__download-button" %> </p>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,58 +1,64 @@
|
||||
<div class="leftside">
|
||||
<h1>Welcome to <em>openSNP</em></h1>
|
||||
<p><%=image_tag "microarray.png",:style => "float:left;margin: 10px"%></p>
|
||||
<p><h7><em>openSNP</em> lets customers of direct-to-customer genetic tests publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and helps scientists find new associations.</h7></p> <center><a href="/signup" class="btn btn-primary btn-large">Sign Up!</a> <a href="/data/zip/opensnp_datadump.current.zip" class="btn btn-primary btn-large">Download the data!</a></center><br/><br/>
|
||||
<div id="tab-container">
|
||||
<ul class="nav nav-tabs">
|
||||
<li><a href="#dtcustomers">For Genotyping Users</a></li>
|
||||
<li><a href="#scientists">For Scientists</a></li>
|
||||
</ul>
|
||||
<div id="dtcustomers">
|
||||
<div class ="well">
|
||||
<div class="row-fluid">
|
||||
<div class="well span3">
|
||||
<h4>Upload Your Genotyping File</h4>
|
||||
<%=image_tag("fileupload.png")%><br/>
|
||||
Upload your raw genotyping or exome data from <em><%=link_to "23andMe","http://www.23andme.com"%></em>, <em><%=link_to "deCODEme","http://www.decodeme.com/"%></em> or <em><%= link_to "FamilyTreeDNA", "http://www.familytreedna.com/" %></em> to the <em>openSNP</em> database to make it available for everybody.
|
||||
</div>
|
||||
<div class="well span3">
|
||||
<h4>Share Your Phenotypes & Traits</h4>
|
||||
<%=image_tag("phenotypes.png")%><br/>
|
||||
Phenotypes are the observable characteristics of your body, such as height, eye color or preference for coffee.
|
||||
Share your phenotype with other <em>openSNP</em> users, and find others with similar characteristics and traits.<br/>Your data may help scientists discover new genetic associations!
|
||||
</div>
|
||||
<div class="well span3">
|
||||
<h4>Share your stories on variations & phenotypes</h4>
|
||||
<%=image_tag("sendmessage.png")%></br>
|
||||
With <em>openSNP</em> you can share stories about your genetic variations and phenotypes, and discover the stories of other users.
|
||||
</div>
|
||||
<div class="well span3">
|
||||
<h4>Find literature on genetic variation</h4>
|
||||
<%=image_tag("literature.png")%></br>
|
||||
<em>openSNP</em> gets the latest open access journal articles on genetic variations from the <em><%=link_to "Public Library of Science","http://www.plos.org/"%></em>. Popular articles are indexed via the social reference manager <em><%=link_to "Mendeley","http://www.mendeley.com/"%></em>, and summaries are provided by <em><%=link_to "SNPedia","http://snpedia.com"%></em>.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div id="scientists">
|
||||
<div class ="well">
|
||||
<div class="row-fluid">
|
||||
<div class="well span4">
|
||||
<h4>Search for phenotypes</h4>
|
||||
<%=image_tag("phenotypesearch.png")%><br/>
|
||||
Many diseases and traits are suspected to have genetical components. Genome Wide Association Studies are a simple tool for finding genetic markers. Easily find people with the variation you are interested in via <em>openSNP</em>.<br/><br/>Is the variation for which you're looking not entered yet? Just add it to <em>openSNP</em>.
|
||||
</div>
|
||||
<div class="well span4">
|
||||
<h4>Easily download datasets</h4>
|
||||
<%=image_tag("filedownload.png")%><br/>
|
||||
The mass-download function of <em>openSNP</em> allows you to easily download full genotyping raw-data in the file formats that are provided by <em>23andMe</em>, <em>deCODEme</em> and <em>FamilyTreeDNA</em>.<br/><br/>As the files can be grouped by their variations for specific phenotypes, it's easy to get datasets that are already usable for association studies.
|
||||
</div>
|
||||
<div class="well span4">
|
||||
<h4>Get notified about new data</h4>
|
||||
<%=image_tag("rss.png")%><br/>
|
||||
<em>openSNP</em> delivers an RSS feed for each phenotype. So you can easily get all new datasets that get available for the phenotypes of your interest, without the need to check for new entries by hand.<br/><br/>For data-junkies that need more data: there's also a feed that carries all new datasets.
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<div class="jumbotron index__jumbotron">
|
||||
<div class="container index__jumbotron-container">
|
||||
<div class="row">
|
||||
<div class="col-md-offset-1 col-md-4 clearfix">
|
||||
<%= image_tag "opensnp-logo.png", width: "220px", class: "hidden-xs index__jumbotron-image pull-left" %>
|
||||
</div>
|
||||
<div class="col-md-6">
|
||||
<h2 class="index__jumbotron-title">Welcome to openSNP</h2>
|
||||
<p class="index__jumbotron-paragraph">openSNP allows customers of direct-to-customer genetic tests to publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and help scientists find new associations.</p>
|
||||
<p class="index__jumbotron-buttons">
|
||||
<a class="btn btn-default btn-lg" href="/data/zip/opensnp_datadump.current.zip" role="button">Download data</a>
|
||||
<a class="btn btn-default btn-lg" href="/signup" role="button">Sign up</a>
|
||||
</p>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div class="container text-center">
|
||||
<h2 class="index__about-title">For genotyping users</h2>
|
||||
<div class="row">
|
||||
<div class="col-md-3 col-xs-12 index__about-texts">
|
||||
<span class="glyphicon glyphicon-arrow-up index__about-text-icons"></span>
|
||||
<h3>Upload Your Genotyping</h3>
|
||||
<p>Upload your raw genotyping or exome data from <%=link_to "23andMe","http://www.23andme.com"%>, <%=link_to "deCODEme","http://www.decodeme.com/"%> or <%= link_to "FamilyTreeDNA", "http://www.familytreedna.com/" %> to the openSNP database to make it available for everybody.</p>
|
||||
</div>
|
||||
<div class="col-md-3 col-xs-12 index__about-texts">
|
||||
<span class="glyphicon glyphicon-heart index__about-text-icons"></span>
|
||||
<h3>Share Your Phenotypes</h3>
|
||||
<p>Share your phenotype with other openSNP users and find others with similar characteristics and traits. Your data may help scientists discover new genetic associations!</p>
|
||||
</div>
|
||||
<div class="col-md-3 col-xs-12 index__about-texts">
|
||||
<span class="glyphicon glyphicon-envelope index__about-text-icons"></span>
|
||||
<h3>Share your stories</h3>
|
||||
<p>With openSNP you can share stories about your genetic variations and phenotypes, and discover the stories of other users.</p>
|
||||
</div>
|
||||
<div class="col-md-3 col-xs-12 index__about-texts">
|
||||
<span class="glyphicon glyphicon-file index__about-text-icons"></span>
|
||||
<h3>Find literature on genetic variation</h3>
|
||||
<p>openSNP gets the latest open access journal articles on genetic variations from the <%=link_to "Public Library of Science","http://www.plos.org/"%>. Popular articles are indexed via the social reference manager <%=link_to "Mendeley","http://www.mendeley.com/"%> and summaries are provided by <%=link_to "SNPedia","http://snpedia.com"%>.</p>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div class="container text-center">
|
||||
<h2 class="index__about-title">For Scientists</h2>
|
||||
<div class="row">
|
||||
<div class="col-md-4 col-xs-12 index__about-texts">
|
||||
<span class="glyphicon glyphicon-search index__about-text-icons"></span>
|
||||
<h3>Search for phenotypes</h3>
|
||||
<p>Many diseases and traits are suspected to have genetical components. Genome Wide Association Studies are a simple tool find genetic markers. Easily find people with the variation you are interested in via openSNP. The variation you are looking for is not entered yet? Just add it to openSNP</p>
|
||||
</div>
|
||||
<div class="col-md-4 col-xs-12 index__about-texts">
|
||||
<span class="glyphicon glyphicon-arrow-down index__about-text-icons"></span>
|
||||
<h3>Easily download datasets</h3>
|
||||
<p>The mass download-function of openSNP allows you to easily download the full genotyping raw-data in the file formats that are provided by 23andMe, deCODEme and FamilyTreeDNA. As the files can be grouped by their variations for specific phenotypes it is easy to get datasets that are already usable for association studies.</p>
|
||||
</div>
|
||||
<div class="col-md-4 col-xs-12 index__about-texts">
|
||||
<span class="glyphicon glyphicon-envelope index__about-text-icons"></span>
|
||||
<h3>Get notified about new data</h3>
|
||||
<p>openSNP delivers a RSS feed for each phenotype. So you can easily get all new datasets that get available for the phenotypes of your interest, without the need to check for new entries by hand. For all data junkies that need more data: There is also a feed that carries all new datasets.</p>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,8 +1,27 @@
|
||||
<hr/>
|
||||
<div class="footer">
|
||||
<div class="container">
|
||||
Contact openSNP: <a href="http://opensnp.wordpress.com" target="_blank">Blog</a> | <a href="http://www.twitter.com/openSNPorg" target="_blank">Twitter</a> | <a href="mailto:info@opensnp.org">Mail</a> | <a href="https://www.iubenda.com/privacy-policy/641811" class="iubenda-nostyle " id="iubenda-embed" title="Privacy Policy">Privacy Policy</a> | <%= link_to "openSNP in the press", "/press"%>
|
||||
<br/><br/>
|
||||
Our hosting is made possible thanks to the kind support of <a href="https://patreon.com/openSNP">our patrons on Patreon.</a> Please consider <a href="https://www.patreon.com/openSNP?ty=h">supporting us as well</a> if our service is valuable to you!
|
||||
<script type="text/javascript">(function (w,d) {var loader = function () {var s = d.createElement("script"), tag = d.getElementsByTagName("script")[0]; s.src = "https://cdn.iubenda.com/iubenda.js"; tag.parentNode.insertBefore(s,tag);}; w.addEventListener ? w.addEventListener("load", loader, false) : w.attachEvent("onload", loader);})(window, document);</script></br></br>
|
||||
The openSNP project is licensed under the <a href="https://github.com/openSNP/snpr/blob/master/LICENSE.md" target="_blank">MIT License</a>, the code <a href="https://github.com/openSNP/snpr">is at GitHub</a>. The data is donated into the public domain using <a href="http://creativecommons.org/publicdomain/zero/1.0/" target="_blank">CC0 1.0</a>. The hand drawn icons were created by <i>one seventy seven</i> and are licensed under <a href="http://creativecommons.org/licenses/by/3.0/" target="_blank">CC BY 3.0</a>, the CSS of openSNP is provided by <a href="http://twitter.github.com/bootstrap/">Bootstrap, from Twitter</a> and is licensed under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License v2.0</a>. Tiny white person in the navigational-bar from <a href="http://glyphicons.com/">glyphicons</a>.
|
||||
<div class="row">
|
||||
<div class="col-md-2 col-xs-2">
|
||||
<h4>Contacts</h4>
|
||||
<ul class="list-unstyled">
|
||||
<li><a href="http://opensnp.wordpress.com">Blog</a></li>
|
||||
<li><a href="http://www.twitter.com/openSNPorg">Twitter</a></li>
|
||||
<li><a href="mailto:info@opensnp.org">Mail</a></li>
|
||||
<li><a href="https://github.com/openSNP/snpr">GitHub</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
<div class="col-md-4 col-md-offset-2 col-xs-6 col-xs-offset-3" style="margin-bottom: 10px;">
|
||||
<p class="footer__texts">Our hosting is made possible thanks to the kind support of <b><a href="https://patreon.com/openSNP">our patrons on Patreon</a></b>. Please consider <b><a href="https://www.patreon.com/openSNP?ty=h">supporting us as well if our service is valuable to you!</a></b></p>
|
||||
</div>
|
||||
<script type="text/javascript">
|
||||
(function (w,d) {var loader = function () {var s = d.createElement("script"), tag = d.getElementsByTagName("script")[0]; s.src = "https://cdn.iubenda.com/iubenda.js"; tag.parentNode.insertBefore(s,tag);}; w.addEventListener ? w.addEventListener("load", loader, false) : w.attachEvent("onload", loader);})(window, document);
|
||||
</script>
|
||||
<div class="col-md-4 col-xs-12">
|
||||
<p class="footer__texts">The openSNP project is licensed under the <b><a href="https://github.com/openSNP/snpr/blob/master/LICENSE.md" target="_blank">MIT License</a></b>, the code is at <b><a href="https://github.com/openSNP/snpr">GitHub</a></b>. The data is donated into the public domain using <b><a href="http://creativecommons.org/publicdomain/zero/1.0/" target="_blank">CC0 1.0</a></b>. The hand drawn icons were created by <b><a href="http://oneseventyseven.com/" target="_blank">one seventy seven</a></b> and are licensed under <b><a href="http://creativecommons.org/licenses/by/3.0/" target="_blank">CC BY 3.0</a></b>, the CSS of openSNP is provided by <b><a href="http://twitter.github.com/bootstrap/">Bootstrap, from Twitter</a></b> and is licensed under the <b><a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License v2.0</a></b>. Tiny white person in the navigational-bar from <b><a href="http://glyphicons.com/">glyphicons</a></b>.</p>
|
||||
</div>
|
||||
</div>
|
||||
<div class="row footer__links-bottom">
|
||||
<p class="text-center"><a href="https://www.iubenda.com/privacy-policy/641811">Privacy Policy</a> | <%= link_to "openSNP in the press", "/press"%></p>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,9 +1,13 @@
|
||||
<div id="<%= id %>" class="modal" style="display: none;">
|
||||
<div class="modal-header">
|
||||
<a class="close" data-dismiss="modal">×</a>
|
||||
<%= content_for id.to_sym%>
|
||||
</div>
|
||||
<div class="modal-body">
|
||||
<%= yield %>
|
||||
<div id="<%= id %>" class="modal fade" tabindex="-1">
|
||||
<div class="modal-dialog">
|
||||
<div class="modal-content">
|
||||
<div class="modal-header">
|
||||
<a class="close modal__text" data-dismiss="modal">×</a>
|
||||
<%= content_for id.to_sym%>
|
||||
</div>
|
||||
<div class="modal-body center-block">
|
||||
<%= yield %>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
73
app/views/layouts/_navbar.html.erb
Normal file
73
app/views/layouts/_navbar.html.erb
Normal file
@@ -0,0 +1,73 @@
|
||||
<nav class="navbar-default navbar-menu">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<%= link_to "openSNP", "/", class: "navbar-brand navbar-menu__brand"%>
|
||||
<button type="button" class="navbar-toggle navbar-menu__hamburger-menu" data-toggle="collapse" data-target=".navbar-collapse">
|
||||
<span class="sr-only">Toggle</span>
|
||||
<span class="navbar-menu__hamburger-menu-icon icon-bar"></span>
|
||||
<span class="navbar-menu__hamburger-menu-icon icon-bar"></span>
|
||||
<span class="navbar-menu__hamburger-menu-icon icon-bar"></span>
|
||||
</button>
|
||||
</div>
|
||||
<ul class="nav navbar-nav navbar-right collapse navbar-collapse">
|
||||
<li><%= link_to "News", "/news", class: "navbar-menu__options"%></li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="navbar-menu__options dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">Data<span class="caret"></span></a>
|
||||
<ul class="dropdown-menu navbar-menu__info-menu">
|
||||
<li><%= link_to "SNPs", {:controller => "snps", :action => "index"}, class: "navbar-menu__options"%></li>
|
||||
<li><%= link_to "Genotypes", {:controller => "genotypes", :action => "index"}, class: "navbar-menu__options"%></li>
|
||||
<li><%= link_to "Phenotypes", {:controller => "phenotypes", :action => "index"}, class: "navbar-menu__options"%></li>
|
||||
<li><%= link_to "Phenotypes Pictures", {:controller => "picture_phenotypes", :action => "index"}, class: "navbar-menu__options"%></li>
|
||||
<li role="separator" class="divider"></li>
|
||||
<li><%= link_to "Fitbit Connections", {:controller => "fitbit_profiles", :action => "index"}, class: "navbar-menu__options"%></li>
|
||||
</ul>
|
||||
</li>
|
||||
<li><%= link_to "Latest Data", "/updates", class: "navbar-menu__options"%></li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="navbar-menu__options dropdown-toggle" data-toggle="dropdown" role="button" aria-haspopup="true" aria-expanded="false">About<span class="caret"></span></a>
|
||||
<ul class="dropdown-menu navbar-menu__info-menu">
|
||||
<li><%= link_to "About Us", "/about-us", class: "navbar-menu__options"%></li>
|
||||
<li><%= link_to "Statistics", "/statistics", class: "navbar-menu__options"%></li>
|
||||
<li role="separator" class="divider"></li>
|
||||
<li><%= link_to "FAQ", "/faq", class: "navbar-menu__options"%></li>
|
||||
</ul>
|
||||
</li>
|
||||
<% if current_user %>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle navbar-menu__options navbar-menu__profile-option" data-toggle="dropdown">
|
||||
<%= image_tag current_user.avatar.url(:thumb), class: "img-circle", width: "32px" %>
|
||||
<%= current_user.name %>
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu navbar-menu__profile-menu">
|
||||
<li><%= link_to("Settings", "/users/"+current_user.id.to_s+"/edit", class: "navbar-menu__options", :id => current_user) %></li>
|
||||
<li><%= link_to("Edit Your Phenotypes", "/users/"+current_user.id.to_s+"/edit#phenotypes", class: "navbar-menu__options")%></li>
|
||||
<%if current_user.fitbit_profile != nil%>
|
||||
<li>
|
||||
<%=link_to("Edit Fitbit settings", {:controller => "fitbit_profiles", :action => "edit"}, class: "navbar-menu__options")%>
|
||||
</li>
|
||||
<%end%>
|
||||
<li class="divider"></li>
|
||||
<li><%= link_to("Messages ("+current_user.messages.where(:user_has_seen => false).length.to_s+")","/users/" + current_user.id.to_s + "#messages", :method => "get", class: "navbar-menu__options")%></li>
|
||||
<li class="divider"></li>
|
||||
<li><%= link_to("Sign out", '/signout', class: "navbar-menu__options") %></li>
|
||||
</ul>
|
||||
</li>
|
||||
<% else %>
|
||||
<li><%= link_to "Sign In", "/signin", class: "navbar-menu__options"%></li>
|
||||
<% end %>
|
||||
<li>
|
||||
<a class="navbar-menu__options hidden-xs" href="#" data-js='search-button'>
|
||||
<span class="glyphicon glyphicon-search" aria-hidden="true"></span>
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
</nav>
|
||||
|
||||
<%= form_tag "/search", :method => "get",:class => "navbar-form navbar-left navbar-menu__search-input", data: {js: "search-form"}, :authenticity_token => true do %>
|
||||
<div class="input-group input-group-sm navbar-menu__search-input-content">
|
||||
<span class="input-group-addon" id="basic-addon1"><span class="glyphicon glyphicon-search" aria-hidden="true"></span></span>
|
||||
<%= text_field_tag :search, nil, :placeholder => "Search", :class => "form-control" %>
|
||||
</div>
|
||||
<% end %>
|
||||
@@ -4,143 +4,101 @@
|
||||
<meta charset="utf-8" http-equiv="X-UA-Compatible" content="IE=edge">
|
||||
<title>openSNP <% if @title %>| <%= @title %><% end %></title>
|
||||
<link rel="shortcut icon" href="/favicon.ico" />
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1, minimum-scale=1, maximum-scale=1" />
|
||||
<%= stylesheet_link_tag "application" %>
|
||||
<%= javascript_include_tag "application" %>
|
||||
<%= csrf_meta_tag %>
|
||||
</head>
|
||||
<body>
|
||||
<div class="navbar-inverse navbar navbar-fixed-top">
|
||||
<div class="navbar-inner">
|
||||
<div class="container">
|
||||
<a class="brand" href="/">openSNP</a>
|
||||
<ul class="nav">
|
||||
<li class=""><%= link_to("News", '/news') %></li>
|
||||
<li class=""><%= link_to("Stats", '/statistics') %></li>
|
||||
<li class="divider-vertical"></li>
|
||||
<li class=""><%= link_to("Genotypes", controller: "genotypes", action: "index") %></li>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown">
|
||||
Phenotypes<b class="caret"></b></a>
|
||||
<ul class="dropdown-menu">
|
||||
<li class=""><%= link_to("Phenotypes", controller: "phenotypes", action: "index") %></li>
|
||||
<li class=""><%= link_to("Picture phenotypes", controller: "picture_phenotypes", action: "index") %></li>
|
||||
<li class=""><%= link_to("Fitbit connections", controller: "fitbit_profiles", action: "index") %></li>
|
||||
</ul>
|
||||
<li class=""><%= link_to("SNPs", controller: "snps", action: "index") %></li>
|
||||
</ul>
|
||||
<%= form_tag "/search", method: "get", class: "navbar-search pull-left", authenticity_token: true do %>
|
||||
<%= text_field_tag :search, nil, placeholder: "Search for Everything!", class: "search-query input-medium" %>
|
||||
<%= submit_tag 'Search', class: 'hidden' %>
|
||||
<% end %>
|
||||
<ul class="nav pull-right">
|
||||
<% if current_user %>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown">
|
||||
<i class="icon-user icon-white"></i>
|
||||
My Account<b class="caret"></b></a>
|
||||
<ul class="dropdown-menu">
|
||||
<li><%= link_to("Settings", :controller => "users", :action => "edit",:id => current_user) %></li>
|
||||
<li><%= link_to("Edit Your Phenotypes", "/users/#{current_user.id}/edit#phenotypes") %></li>
|
||||
<%if current_user.fitbit_profile != nil%><li><%= link_to("Edit Fitbit settings" , controller: "fitbit_profiles", action: "edit") %></li><%end%>
|
||||
<li class="divider"></li>
|
||||
<li><%= link_to("Messages (#{current_user.messages.where(:user_has_seen => false).length})", "/users/#{current_user.id}#messages", :method => "get") %></li>
|
||||
<li class="divider"></li>
|
||||
<li><%= link_to("Sign out", '/signout') %></li>
|
||||
</ul>
|
||||
</li>
|
||||
<% else %>
|
||||
<li><%= link_to("Sign in", '/signin') %></li>
|
||||
<% end %>
|
||||
<li><%= link_to("FAQ", '/faq') %></li>
|
||||
</ul>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<%= render "layouts/navbar"%>
|
||||
|
||||
<%if current_user %>
|
||||
<% if current_user.display_help_header? %>
|
||||
<div class="container" id="help_block">
|
||||
<div class ="well row-fluid">
|
||||
<center><h3>Welcome to openSNP. Here are some first steps you could do:</h3></center><br/>
|
||||
<%if !current_user.help_one %>
|
||||
<div class="well span4" id="help_one">
|
||||
<%=link_to("x",{:controller => "users", :action => "remove_help_one", :id => current_user}, :remote => true, id: "remove_help_one",:class => "close") %>
|
||||
<h4 class="alert-heading">Upload Your Genotyping File</h4>
|
||||
<%=link_to(image_tag("fileupload.png"), "/genotypes/new")%><br/>
|
||||
<%=link_to("Upload the genotyping raw-data you got","/genotypes/new")%> from <em>23andMe</em>, <em>deCODEme</em> or <em>FamilyTreeDNA</em> to the <em>openSNP</em> database to share it with other personal-genomics customers and scientists from around the world.
|
||||
</div>
|
||||
<%end%>
|
||||
<%if !current_user.help_two %>
|
||||
<div class="well span3" id="help_two">
|
||||
<%=link_to("x",{:controller => "users", :action => "remove_help_two", :id => current_user},:remote => true, id: "remove_help_two", :class => "close")%>
|
||||
<h4 class="alert-heading">Enter Your Variations</h4>
|
||||
<%=link_to(image_tag("phenotypes.png"), "/users/"+current_user.id.to_s+"#unentered_variations")%><br/>
|
||||
Let us, and the other <em>openSNP</em> users, know some of your characteristics—like hair or eye color! Or how about some diseases? <%=link_to("Whatever you feel like sharing!","/users/"+current_user.id.to_s+"#unentered_variations")%>.
|
||||
</div>
|
||||
<%end%>
|
||||
<%if !current_user.help_three %>
|
||||
<div class="well span3" id="help_three">
|
||||
<%=link_to("x",{:controller => "users", :action => "remove_help_three", :id => current_user},:remote => true, id: "remove_help_three", :class => "close")%>
|
||||
<h4 class="alert-heading">Enter a New Phenotype</h4>
|
||||
<%=link_to(image_tag("addphenotype.png"), "/phenotypes/new")%><br/>
|
||||
Got an idea for a phenotype that has not been asked about yet and that could have genetical roots? <%=link_to("Great, you can add one","/phenotypes/new")%> to the <em>openSNP</em> database.
|
||||
</div>
|
||||
<%end%>
|
||||
</div>
|
||||
<div id="help_block" class="container">
|
||||
<% if current_user.display_help_header? %>
|
||||
<div class ="well row userpage__help-block">
|
||||
<%if !current_user.help_one %>
|
||||
<div class="col-md-4 text-center" id="help_one">
|
||||
<%=link_to "x",{:controller => "users", :action => "remove_help_one", :id => current_user}, :remote => true, id: "remove_help_one",:class => "close" %>
|
||||
<a href="/genotypes/new"><span class="glyphicon glyphicon-arrow-up userpage__help-text-icons"></span></a><br/>
|
||||
<h3>Upload Your Genotyping File</h3>
|
||||
<p>
|
||||
<%=link_to("Upload the genotyping raw-data you got","/genotypes/new")%> from <em>23andMe</em>, <em>deCODEme</em> or <em>FamilyTreeDNA</em> to the <em>openSNP</em> database to share it with other personal-genomics customers and scientists from around the world.
|
||||
</p>
|
||||
</div>
|
||||
<%end%>
|
||||
<%if !current_user.help_two %>
|
||||
<div class="col-md-4 text-center" id="help_two">
|
||||
<%=link_to("x",{:controller => "users", :action => "remove_help_two", :id => current_user},:remote => true, id: "remove_help_two", :class => "close")%>
|
||||
<a href="/users/"+current_user.id.t_s+"#unentered_variations"><span class="glyphicon glyphicon-heart userpage__help-text-icons"></span></a><br/>
|
||||
<h3>Enter Your Variations</h3>
|
||||
Let us, and the other <em>openSNP</em> users, know some of your characteristics—like hair or eye color! Or how about some diseases? <%=link_to("Whatever you feel like sharing!","/users/"+current_user.id.to_s+"#unentered_variations")%>.
|
||||
</div>
|
||||
<%end%>
|
||||
<%if !current_user.help_three %>
|
||||
<div class="col-md-4 text-center" id="help_three">
|
||||
<%=link_to("x",{:controller => "users", :action => "remove_help_three", :id => current_user},:remote => true, id: "remove_help_three", :class => "close")%>
|
||||
<a href="/phenotypes/new"><span class="glyphicon glyphicon-folder-open userpage__help-text-icons"></span></a><br/>
|
||||
<h3>Enter a New Phenotype</h3>
|
||||
<p>
|
||||
Got an idea for a phenotype that has not been asked about yet and that could have genetical roots? <%=link_to("Great, you can add one","/phenotypes/new")%> to the <em>openSNP</em> database.
|
||||
</p>
|
||||
</div>
|
||||
<%end%>
|
||||
</div>
|
||||
<%end%>
|
||||
</div>
|
||||
<%end%>
|
||||
<div class="container" id="alert-messages">
|
||||
<div class="container-fluid warnings_container" id="alert-messages">
|
||||
<div id="flash_notice" class="alert alert-success" style="display:none"></div>
|
||||
<% if flash[:notice] %>
|
||||
<div class="alert alert-success" data-dismiss="alert">
|
||||
<div class="warning__alert alert alert-success text-center center-block" data-dismiss="alert">
|
||||
<button type="button" class="close" data-dismiss="alert">x</button>
|
||||
<strong><%= flash[:notice].html_safe %></strong>
|
||||
</div>
|
||||
<% end %>
|
||||
<% if flash[:warning] %>
|
||||
<div class="alert alert-error" data-dismiss="alert">
|
||||
<div class="warning__alert alert alert-danger text-center center-block" data-dismiss="alert">
|
||||
<button type="button" class="close" data-dismiss="alert">x</button>
|
||||
<strong><%= flash[:warning].html_safe %></strong>
|
||||
</div>
|
||||
<% end %>
|
||||
<% if flash[:achievement] %>
|
||||
<div class="alert alert-info" data-dismiss="alert">
|
||||
<div class="warning__alert alert alert-info text-center center-block" data-dismiss="alert">
|
||||
<button type="button" class="close" data-dismiss="alert">x</button>
|
||||
<strong><%= flash[:achievement].html_safe %></strong>
|
||||
</div>
|
||||
<% end %>
|
||||
</div>
|
||||
|
||||
<% if ["phenotypes", "picture_phenotypes", "fitbit_profiles"].include? params[:controller] %>
|
||||
</div>
|
||||
<div class="container-fluid">
|
||||
<div class="row-fluid">
|
||||
<div class="span2">
|
||||
<% if ["phenotypes", "picture_phenotypes", "fitbit_profiles"].include? params[:controller] %>
|
||||
<div class="container-fluid">
|
||||
<div class="row">
|
||||
<div class="col-md-2 col-xs-6 col-xs-offset-2 col-md-offset-0">
|
||||
|
||||
<ul class="nav nav-tabs nav-stacked ">
|
||||
<li class="nav-header">User-generated</li>
|
||||
<li><a href="/phenotypes">Normal phenotypes</a></li>
|
||||
<li><a href="/picture_phenotypes">Picture phenotypes</a></li>
|
||||
<li class="nav-header">APIs</li>
|
||||
<li><a href="/fitbit">Fitbit phenotypes</a></li>
|
||||
</ul>
|
||||
<ul class="nav nav-pills nav-stacked phenotype__side-menu">
|
||||
<li class="nav-header">User-generated</li>
|
||||
<li <% if params[:controller] == "phenotypes" %>class="active"<% end %>>
|
||||
<a class="phenotype__side-menu-item" href="/phenotypes">Normal phenotypes</a>
|
||||
</li>
|
||||
<li <% if params[:controller] == "picture_phenotypes" %>class="active"<% end %>>
|
||||
<a class="phenotype__side-menu-item" href="/picture_phenotypes">Picture phenotypes</a>
|
||||
</li>
|
||||
<li class="nav-header">APIs</li>
|
||||
<li <% if params[:controller] == "fitbit_profiles" %>class="active"<% end %>>
|
||||
<a class="phenotype__side-menu-item" href="/fitbit">Fitbit phenotypes</a>
|
||||
</li>
|
||||
</ul>
|
||||
|
||||
</div>
|
||||
<div class="span8">
|
||||
<% end # of sidebar%>
|
||||
|
||||
<div class="container">
|
||||
<%= yield %>
|
||||
</div>
|
||||
|
||||
|
||||
<footer class="footer">
|
||||
<%= render "layouts/footer"%>
|
||||
</footer>
|
||||
<% if params[:controller] == "phenotypes" %>
|
||||
<div class="col-md-8 col-xs-12">
|
||||
<%= yield %>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<% end %>
|
||||
<% else %>
|
||||
<%= yield %>
|
||||
<% end # of sidebar%>
|
||||
|
||||
<%= render "layouts/footer"%>
|
||||
</body>
|
||||
</html>
|
||||
|
||||
@@ -1,30 +1,26 @@
|
||||
<% if @answering %>
|
||||
<h2>Answering:</h2>
|
||||
<div class="well">
|
||||
<%= render 'shared/error_messages', :target => @message %>
|
||||
<div class="general__container container">
|
||||
<% if @answering %>
|
||||
<h3 class="general__title">Answering:</h3>
|
||||
<div class="well new-message__received-message">
|
||||
<p><b>Subject: <%= @answering.subject %></b></p>
|
||||
<p><%= @answering.body %></p>
|
||||
</div>
|
||||
<%end%>
|
||||
<h2>Compose Message</h2>
|
||||
<%= form_for @message do |f| %>
|
||||
<%= render 'shared/error_messages', :target => @message %>
|
||||
<div class="clearfix">
|
||||
<%end%>
|
||||
<h3 class="general__title">Compose Message</h3>
|
||||
<%= form_for @message do |f| %>
|
||||
<div class="form-group">
|
||||
<%= f.label :to_id, 'To' %>
|
||||
<%= f.select(:to_id, @users.map { |user| [user.name, user.id] }, selected: params[:user_to_send]) %>
|
||||
<%= f.select(:to_id, @users.map { |user| [user.name, user.id] },{selected: params[:user_to_send]}, {class: "new-message__select-input"}) %>
|
||||
</div>
|
||||
<div class="clearfix">
|
||||
<div class="form-group">
|
||||
<%= f.label :subject %>
|
||||
<div class="input">
|
||||
<%= f.text_field :subject%>
|
||||
</div>
|
||||
<%= f.text_field :subject, class: "form-control"%>
|
||||
</div>
|
||||
<div class="clearfix">
|
||||
<div class="form-group">
|
||||
<%= f.label "body"%>
|
||||
<div class="input">
|
||||
<%= f.text_area :body, :size => "10x10" %>
|
||||
</div>
|
||||
<%= f.text_area :body, :size => "10x10", class: "form-control" %>
|
||||
</div>
|
||||
<div class="actions">
|
||||
<%= f.submit "Send", :class => "btn btn-primary"%>
|
||||
</div>
|
||||
<% end %>
|
||||
<%= f.submit "Send", :class => "btn btn-default btn-lg"%>
|
||||
<% end %>
|
||||
</div>
|
||||
|
||||
@@ -1,22 +1,20 @@
|
||||
<h1>Message</h1>
|
||||
<h4>Date: <%= @message.created_at %> </h4>
|
||||
<h4>From: <%if @from != "Deleted User"%><%=image_tag @from.avatar.url(:head)%><%= link_to @from.name, @from %><%else%>Deleted User<%end%></h4>
|
||||
<h4>To: <% if @to == @current_user %> You! <% else %> <% if @to != "Deleted User" %><%= image_tag @to.avatar.url(:head) %><%= link_to @to.name, @to %></h4><% else %>Deleted User<% end %><% end %>
|
||||
<div class="general__container container">
|
||||
<h3 class="general__title">Message</h3>
|
||||
<div class="message__message-informations">
|
||||
<h4>From: <%if @from != "Deleted User"%><%= link_to @from.name, @from %><%else%>Deleted User<%end%></h4>
|
||||
<h4>To: <% if @to == @current_user %> You <% else %> <% if @to != "Deleted User" %><%= link_to @to.name, @to %></h4><% else %>Deleted User<% end %><% end %></h4>
|
||||
<span class="message__message-date"><%= @message.created_at %> </span>
|
||||
|
||||
<div class="row">
|
||||
<div class="span8">
|
||||
<h3>Subject: <%=@message.subject %></h3>
|
||||
</div><br/>
|
||||
<div class="span2">
|
||||
<%if @from != "Deleted User"%>
|
||||
<%= link_to "Reply", {:controller => "messages", :action => "new", :user_to_send => @from.id, :message => @message}, :class => "btn btn-primary" %>
|
||||
<%end%>
|
||||
</div>
|
||||
<div class="span2">
|
||||
<%= button_to "Delete", message_path(@message.id), :method => :delete, :confirm => "Are you sure?", :class => "btn btn-danger"%>
|
||||
</div>
|
||||
</div>
|
||||
<div class="well message__message">
|
||||
<h3 class="message__message-subject">Subject: <%=@message.subject %></h3>
|
||||
<%= simple_format(@message.body, class: "message__message-body") %>
|
||||
</div>
|
||||
<div class="message__buttons">
|
||||
<%if @from != "Deleted User"%>
|
||||
<%= link_to "Reply", {:controller => "messages", :action => "new", :user_to_send => @from.id, :message => @message}, :class => "btn btn-primary message__reply-button" %>
|
||||
<%end%>
|
||||
<%= button_to "Delete", message_path(@message.id), :method => :delete, :confirm => "Are you sure?", :class => "btn btn-danger message__delete-button"%>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div class="well">
|
||||
<p><%= simple_format(@message.body) %></p>
|
||||
</div>
|
||||
|
||||
@@ -1,195 +1,61 @@
|
||||
<legend>News</legend>
|
||||
<div id="tab-container">
|
||||
<ul class="nav nav-tabs">
|
||||
<li><a href="#general">On openSNP</a></li>
|
||||
<li><a href="#users">New users</a></li>
|
||||
<li><a href="#genotypes">New genotypes</a></li>
|
||||
<li><a href="#phenotypes">New phenotypes</a></li>
|
||||
<li><a href="#publications">Latest publications</a></li>
|
||||
<li><a href="#snpcomments">SNP-Comments</a></li>
|
||||
<li><a href="#phenotypecomments">Phenotype-Comments</a></li>
|
||||
<div class="general__container container">
|
||||
<h3 class="general__title">News</h3>
|
||||
<ul class="list-unstyled">
|
||||
<li class="news__single-news">
|
||||
<h3 class="news__single-news-title">We're joining the Google Summer of Code</h3>
|
||||
<p>
|
||||
Each year Google is running its Google Summer of Code (GSoC), which is aimed at students to get started with open source work. Students participating in it will get paid by Google to work on a specific open source project for 3 months.
|
||||
The Open Bioinformatics Foundation (OBF) has put up a few of our project ideas, so if you're a currently enrolled student and you want to <a href="http://obf.github.io/GSoC/ideas/#opensnp">work on improving openSNP while earning money, our proposed projects are listed online</a>.
|
||||
Most of the projects don't require too much specific biology knowledge but basic proficiency in Ruby (on Rails) and Web Development. And even if you're lacking the Ruby skills but know other scripting languages it might be something for you. You won't be on your own, as we will mentor successful applicants.
|
||||
Some more general information can <a href="http://obf.github.io/GSoC/">be found on the OBF's GSoC pages</a>.
|
||||
The application deadline for this year's Google Summer of Code (GSoC) is approaching fast (March 25th). So If you're interested in participating in this program, just reply to this newsletter or <a href="https://gitter.im/openSNP/snpr">join us on gitter</a>
|
||||
</p>
|
||||
<span class="news__single-news-date">2016-03-17</span>
|
||||
</li>
|
||||
<li class="news__single-news">
|
||||
<h3 class="news__single-news-title">Adopting a Code of Conduct</h3>
|
||||
<p>
|
||||
We strive to keep openSNP a friendly community, amongst our developers as well as the community on openSNP.org. So far this hasn't been a problem and we don't expect it to become one. Thanks for being model open science citizens to everyone in the openSNP universe. In order to show our commitment to diversity, inclusion and creating safe spaces we are adopting a Code of Conduct, inspired by the team of Slidewinder.io.
|
||||
</p>
|
||||
<span class="news__single-news-date">2016-02-05</span>
|
||||
</li>
|
||||
<li class="news__single-news">
|
||||
<h3 class="news__single-news-title">openSNP is now on Patreon</h3>
|
||||
<p>
|
||||
As our database has grown so much (over 2100 data sets already!), we will need to upgrade our server to keep track with the amount of data to process. <a href="https://www.patreon.com/openSNP?ty=h"> To support us in renting more computing power you can help us with a small monthly contribution on <i>Patreon</i></a>. You can <a href="https://opensnp.wordpress.com/2015/09/23/support-opensnp-on-patreon/">learn more about this on our blog!</a>
|
||||
</p>
|
||||
<span class="news__single-news-date">2015-09-23</span>
|
||||
</li>
|
||||
<li class="news__single-news">
|
||||
<h3 class="news__single-news-title">#thedress, ethics for participant-lead research, research hack days</h3>
|
||||
<p>
|
||||
We have sent out one of our rare newsletters! If you haven't received your copy - which is likely since our mailing system apparently flips coins to decide whether to send out mails - the entire text is available on our blog <a href="https://opensnp.wordpress.com/2015/04/04/thedress-ethics-for-participant-lead-research-research-hack-days/">here</a>. Happy Easter!
|
||||
</p>
|
||||
<span class="news__single-news-date">No date</span>
|
||||
</li>
|
||||
<li class="news__single-news">
|
||||
<h3 class="news__single-news-title">3 years of openSNP and 1000 genotypings!</h3>
|
||||
<p>
|
||||
We support the <a href="http://wh.gov/6TH">access2research petition for Open Access</a> directed to the Obama administration. The petition wants to make Open Access publication of tax-funded publications mandatory. In total, 25,000 signatures are needed to have the petition officially reviewed by the White House. Non-US-citizens may sign the petition, too, so <a href="http://wh.gov/6TH">it would be great if you sign it</a>, too! For more information, please <a href="http://opensnp.wordpress.com/2012/05/23/a-petition-on-open-access/">read our blogpost on the petition</a>.
|
||||
<div align="center"><%= image_tag "a2r.png", class: "hidden-xs" %></div>
|
||||
</p>
|
||||
<span class="news__single-news-date">No date</span>
|
||||
</li>
|
||||
<li class="news__single-news">
|
||||
<h3 class="news__single-news-title">API: JSON methods</h3>
|
||||
<p>
|
||||
The promised support for the <em>Distributed Annotation System</em> will take some time. But in the meantime you can access <em>openSNP</em> using some simple JSON-methods. Examples can be found for <a href="http://opensnp.org/snps/json/rs9939609/1.json">SNPs</a>, <a href="http://opensnp.org/users.json">users</a> and <a href="http://opensnp.org/phenotypes/json/1,6,8.json">phenotypes</a>. To learn more about how to use those methods you may want to <a href="http://opensnp.org/faq#api">read the FAQ</a> or this blogpost we've written about this.
|
||||
</p>
|
||||
<span class="news__single-news-date">No date</span>
|
||||
</li>
|
||||
<li class="news__single-news">
|
||||
<h3 class="news__single-news-title">SSL-Support</h3>
|
||||
<p>
|
||||
Hello everyone! We've bought a SSL-certificate so that you can safely browse this site (especially relevant if you log in to this site over an open WLAN). You can access the SSL-version of openSNP over <a href="https://opensnp.org">this link</a>. It's still experimental, so if you find anything please message <a href"http://opensnp.org/messages/new?user_to_send=23">Philipp</a> or <a href="http://opensnp.org/messages/new?user_to_send=1">Bastian</a>.
|
||||
</p>
|
||||
<span class="news__single-news-date">No date</span>
|
||||
</li>
|
||||
</ul>
|
||||
<div id="general">
|
||||
<a class="twitter-timeline" data-dnt="true" href="https://twitter.com/openSNPorg" data-widget-id="738263692672782336">Tweets by @openSNPorg</a>
|
||||
<script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0],p=/^http:/.test(d.location)?'http':'https';if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src=p+"://platform.twitter.com/widgets.js";fjs.parentNode.insertBefore(js,fjs);}}(document,"script","twitter-wjs");</script>
|
||||
<h5> 2016-03-17: We're joining the Google Summer of Code</h5>
|
||||
<p>
|
||||
Each year, Google runs its Google Summer of Code (GSoC) program, which is aimed at students interested in open-source work. Participating students will get paid by Google to work on a specific open-source project for 3 months.
|
||||
</p>
|
||||
<p>
|
||||
The Open Bioinformatics Foundation (OBF) has put up a few of our project ideas, so if you're a currently enrolled student and you want to <a href="http://obf.github.io/GSoC/ideas/#opensnp">work on improving openSNP while earning money, our proposed projects are listed online</a>.
|
||||
</p>
|
||||
<p>
|
||||
Most of the projects don't require too much specific biology knowledge but basic proficiency in Ruby (on Rails) and Web Development. And even if you're lacking the Ruby skills but know other scripting languages it might be something for you. You won't be on your own, as we will mentor successful applicants.
|
||||
</p>
|
||||
<p>
|
||||
Some more general information can <a href="http://obf.github.io/GSoC/">be found on the OBF's GSoC pages</a>.
|
||||
</p>
|
||||
<p>
|
||||
The application deadline for this year's Google Summer of Code (GSoC) is approaching quickly (March 25th). So if you're interested in participating in this program, just reply to this newsletter or <a href="https://gitter.im/openSNP/snpr">join us on gitter</a>.
|
||||
</p>
|
||||
<h5> 2016-02-05: Adopting a Code of Conduct</h5>
|
||||
<p>
|
||||
We strive to keep openSNP a friendly community, amongst our developers as well as the community on openSNP.org. So far this hasn't been a problem, and we don't expect it to become one. Thanks for being model open science citizens to everyone in the openSNP universe. In order to show our commitment to diversity, inclusion and creating safe spaces <a href="https://github.com/openSNP/snpr/blob/master/CODE_OF_CONDUCT.md">we are adopting a Code of Conduct</a>, inspired by the team of <a href="http://www.slidewinder.io">Slidewinder.io</a>.
|
||||
</p>
|
||||
<h5> 2015-09-23: openSNP is now on Patreon </h5>
|
||||
<p>
|
||||
As our database has grown so much (over 2100 data sets already!), we will need to upgrade our server to keep track with the amount of data to process. <a href="https://www.patreon.com/openSNP?ty=h"> To support us in renting more computing power you can help us with a small monthly contribution on <i>Patreon</i></a>. You can <a href="https://opensnp.wordpress.com/2015/09/23/support-opensnp-on-patreon/">learn more about this on our blog!</a>
|
||||
</p>
|
||||
<h5> #thedress, ethics for participant-lead research, research hack days </h5>
|
||||
<p>
|
||||
We have sent out one of our rare newsletters! If you haven't received your copy - which is likely since our mailing system apparently flips coins to decide whether to send out mails - the entire text is available on our blog <a href="https://opensnp.wordpress.com/2015/04/04/thedress-ethics-for-participant-lead-research-research-hack-days/">here</a>. Happy Easter!
|
||||
</p>
|
||||
<h5>3 years of openSNP and 1000 genotypings!</h5>
|
||||
<p>openSNP has now been running for 3 years and we recently received the 1000th genotyping. Thanks to all users and helpers who made this possible! <a href='http://opensnp.wordpress.com/2014/05/31/1000-genotypings-and-3-years-of-opensnp/'>More on the blog</a>.<p>
|
||||
<h5>Support the Open Access petition of access2research</h5>
|
||||
<p>We support the <a href="http://wh.gov/6TH">access2research petition for Open Access</a> directed to the Obama administration. The petition seeks to make Open Access publication of tax-funded publications mandatory. In total, 25,000 signatures are needed to have the petition officially reviewed by the White House. Non-US-citizens may sign the petition, too, so <a href="http://wh.gov/6TH">it would be great if you sign it</a>, too! For more information, please <a href="http://opensnp.wordpress.com/2012/05/23/a-petition-on-open-access/">read our blogpost on the petition</a>.
|
||||
<div align="center"><%= image_tag("a2r.png") %></div>
|
||||
</p>
|
||||
<h5>API: JSON methods</h5>
|
||||
<p>
|
||||
The promised support for the <em>Distributed Annotation System</em> will take some time. But in the meantime, you can access <em>openSNP</em> using some simple JSON-methods. Examples can be found for <a href="http://opensnp.org/snps/json/rs9939609/1.json">SNPs</a>, <a href="http://opensnp.org/users.json">users</a>, and <a href="http://opensnp.org/phenotypes/json/1,6,8.json">phenotypes</a>. To learn more about how to use those methods you may want to <a href="http://opensnp.org/faq#api">read the FAQ</a> or this blogpost we've written about this.
|
||||
</p>
|
||||
<h5>SSL-Support</h5>
|
||||
<p>
|
||||
Hello everyone! We've bought a SSL-certificate so that you can safely browse this site (especially relevant if you log in to this site over an open WLAN). You can access the SSL-version of openSNP over <a href="https://opensnp.org">this link</a>. It's still experimental, so if you find anything please message <a href"http://opensnp.org/messages/new?user_to_send=23">Philipp</a> or <a href="http://opensnp.org/messages/new?user_to_send=1">Bastian</a>.
|
||||
</p>
|
||||
</div>
|
||||
|
||||
<div id="genotypes">
|
||||
<%=auto_discovery_link_tag(:rss,"/rss", {:title => "RSS for all genotypes"})%>
|
||||
<div class="row">
|
||||
<div class="span2"><h3>Genotypes</h3></div><br/><div class="span1"><%=link_to(image_tag("rss_small.png"),"/rss")%></div>
|
||||
</div>
|
||||
<br/>
|
||||
<b><%= link_to("Show All Genotypes", :controller => "genotypes", :action => "index")%></b>
|
||||
<table class="table table-striped">
|
||||
<tr>
|
||||
<th>#</th>
|
||||
<th>Genotype-ID</th>
|
||||
<th>Uploaded by</th>
|
||||
<th>Uploaded on</th>
|
||||
<th>Description</th>
|
||||
<th>Download</th>
|
||||
</tr>
|
||||
<% @new_genotypes.each do |ng| %>
|
||||
<tr>
|
||||
<td><%= Genotype.all.sort {|a,b| a.id <=> b.id}.index(ng) + 1 %></td>
|
||||
<td><%= ng.id %></td>
|
||||
<td><%=image_tag ng.user.avatar.url(:head),:style => "vertical-align:middle"%> <%= link_to(User.find(ng.user_id).name, User.find(ng.user_id)) %></td>
|
||||
<td><%= ng.created_at %></td>
|
||||
<td><%= link_to "Click here", ng %></td>
|
||||
<td><%= link_to "Right-click and 'Save as..'", '../data/' + ng.fs_filename %></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
</table>
|
||||
</div>
|
||||
<div id="users">
|
||||
<h3>Users</h3><br/>
|
||||
<b><%= link_to("Show All Users", :controller => "users", :action => "index")%></b>
|
||||
<table class="table table-striped">
|
||||
<tr>
|
||||
<th>#</th>
|
||||
<th>ID</th>
|
||||
<th>Name</th>
|
||||
<th>Joined on</th>
|
||||
<th>Link</th>
|
||||
</tr>
|
||||
<% @new_users.each do |nu| %>
|
||||
<tr>
|
||||
<td><%= User.all.sort {|a,b| a.id <=> b.id}.index(nu) + 1 %></td>
|
||||
<td><%= nu.id %></td>
|
||||
<td><%=image_tag nu.avatar.url(:head),:style => "vertical-align:middle"%> <%= nu.name %></td>
|
||||
<td><%= nu.created_at %></td>
|
||||
<td><%= link_to "Profile", nu %></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
</table>
|
||||
</div>
|
||||
<div id="phenotypes">
|
||||
<h3>Phenotypes</h3><br/>
|
||||
<b><%= link_to("Show All Phenotypes", :controller => "phenotypes", :action => "index")%></b>
|
||||
<table class="table table-striped">
|
||||
<tr>
|
||||
<th>Name</th>
|
||||
<th>Variations</th>
|
||||
<th># of Users</th>
|
||||
</tr>
|
||||
<% @new_phenotypes.each do |nu| %>
|
||||
<tr>
|
||||
<td><%= link_to nu.characteristic, nu %></td>
|
||||
<td><ul><%nu.known_phenotypes.each do |kp|%><li><%= kp %></li><%end%></ul></td>
|
||||
<td><%= nu.number_of_users %></td>
|
||||
</tr>
|
||||
<% end %>
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="phenotypecomments">
|
||||
<h3>Phenotype Comments</h3><br/>
|
||||
<table class="table table-striped">
|
||||
<tr>
|
||||
<th>Phenotype</th>
|
||||
<th>Comment By</th>
|
||||
<th>Subject</th>
|
||||
<th>Date</th>
|
||||
</tr>
|
||||
<%@new_phenotype_comments.each do |pc|%>
|
||||
<%if pc.phenotype != nil%>
|
||||
<tr>
|
||||
<td><%=link_to pc.phenotype.characteristic, pc.phenotype%></td>
|
||||
<td><%if pc.user != nil%><%=link_to pc.user.name, pc.user%><%else%>Deleted User<%end%></td>
|
||||
<td><%if pc.subject != ""%><%=pc.subject%><%else%>-<%end%></td>
|
||||
<td><%=pc.created_at%></td>
|
||||
</tr>
|
||||
<%end%>
|
||||
<%end%>
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="snpcomments">
|
||||
<h3>SNP Comments</h3><br/>
|
||||
<table class="table table-striped">
|
||||
<tr>
|
||||
<th>SNP</th>
|
||||
<th>Comment By</th>
|
||||
<th>Subject</th>
|
||||
<th>Date</th>
|
||||
</tr>
|
||||
<%@new_snp_comments.each do |pc|%>
|
||||
<tr>
|
||||
<td><%=link_to pc.snp.name, pc.snp%></td>
|
||||
<td><%if pc.user != nil%><%=link_to pc.user.name, pc.user%><%else%>Deleted User<%end%></td>
|
||||
<td><%if pc.subject != ""%><%=pc.subject%><%else%>-<%end%></td>
|
||||
<td><%=pc.created_at%></td>
|
||||
</tr>
|
||||
<%end%>
|
||||
</table>
|
||||
</div>
|
||||
|
||||
<div id="publications">
|
||||
<div class="row">
|
||||
<div class="span3"><h3>Latest publications</h3></div><br/><div class="span1"><%=link_to(image_tag("rss_small.png"),"/paper/rss")%></div>
|
||||
</div>
|
||||
<br/>
|
||||
<table class="table table-striped">
|
||||
<tr>
|
||||
<th>SNPs</th>
|
||||
<th>Author</th>
|
||||
<th>Title</th>
|
||||
<th>Found at</th>
|
||||
</tr>
|
||||
<%@newest_paper.each do |np|%>
|
||||
<tr>
|
||||
<td><% np.snps.each do |s| %><%=link_to s.name, s%> <% end %></td>
|
||||
<td><%=np.first_author%></td>
|
||||
<%if np.class == PlosPaper%>
|
||||
<td><%= link_to( np.title.html_safe, "http://dx.doi.org/"+np.doi)%></td>
|
||||
<%else%>
|
||||
<td><%=link_to( np.title, np.mendeley_url)%></td>
|
||||
<%end%>
|
||||
<td><%=np.created_at%></td>
|
||||
</tr>
|
||||
<%end%>
|
||||
</table>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
@@ -1,10 +1,13 @@
|
||||
<h1>Forgot Password</h1>
|
||||
<div class="general__container container">
|
||||
<h3 class="general__title">Forgot Password</h3>
|
||||
|
||||
Fill out the form below, and instructions to reset your password will be emailed to you:<br />
|
||||
<br />
|
||||
<p>Fill out the form below, and instructions to reset your password will be emailed to you:</p>
|
||||
|
||||
<%= form_tag password_resets_path do %>
|
||||
<label>Email:</label>
|
||||
<%= text_field_tag "email" %>
|
||||
<%= submit_tag "Reset my password", :class => "btn btn-primary" %>
|
||||
<% end %>
|
||||
<%= form_tag password_resets_path do %>
|
||||
<div class="form-group">
|
||||
<%= label_tag :email %>
|
||||
<%= text_field_tag "email", "", class: "form-control" %>
|
||||
</div>
|
||||
<%= submit_tag "Reset my password", :class => "btn btn-primary password-reset__submit-button" %>
|
||||
<% end %>
|
||||
</div>
|
||||
|
||||
@@ -1,17 +1,16 @@
|
||||
<h3>Comment on this phenotype</h3>
|
||||
<%= form_for @phenotype_comment, :html => {:class => "form-stacked",:name => "new_comment"} do |f| %>
|
||||
<%= render 'shared/error_messages', :target => @phenotype %>
|
||||
<%= f.hidden_field :phenotype_id, :value => @phenotype.id %>
|
||||
<div class="well">
|
||||
<div class="clearfix">
|
||||
<%= f.label :subject%>
|
||||
<%= f.text_field :subject %>
|
||||
</div>
|
||||
<div class="clearfix">
|
||||
<%= f.label :comment_text %>
|
||||
<%= f.text_area :comment_text, :size => "20x5" %>
|
||||
</div>
|
||||
|
||||
<%= f.submit "Comment", :class => "btn btn-primary" %>
|
||||
<% end %>
|
||||
<div class="comments__comment-box well">
|
||||
<h3>Comment on this phenotype</h3>
|
||||
<%= form_for @phenotype_comment, :html => {:class => "comments__comment-box-form",:name => "new_comment"} do |f| %>
|
||||
<%= f.hidden_field :phenotype_id, :value => @phenotype.id %>
|
||||
<div class="form-group">
|
||||
<%= f.label :subject%>
|
||||
<%= f.text_field :subject, class: "form-control" %>
|
||||
</div>
|
||||
<div class="form-group">
|
||||
<%= f.label :comment_text %>
|
||||
<%= f.text_area :comment_text, :size => "20x5", class: "form-control" %>
|
||||
</div>
|
||||
<%= f.submit "Comment", :class => "btn btn-default" %>
|
||||
<% end %>
|
||||
</div>
|
||||
|
||||
@@ -1,24 +1,29 @@
|
||||
<script language="JavaScript" type="text/JavaScript">
|
||||
function sendCommentId(e, text)
|
||||
{
|
||||
e.value = text + e.value
|
||||
}
|
||||
</script>
|
||||
|
||||
<% @comments.each do |c|%>
|
||||
|
||||
|
||||
<div id="<%="comment"+c.id.to_s%>">
|
||||
<b><%= c.subject %></b> by <%if c.user != nil %><%= link_to c.user.name, c.user%><%else%>Deleted User<%end%> on <%= c.created_at %><br/>
|
||||
<div class="well">
|
||||
<a href="#" rel="comment_tooltip" title="<%if c.reply_to_id != -1 and c.reply_to_id != nil%><%if PhenotypeComment.find_by_id(c.reply_to_id).user != nil%><b><%=PhenotypeComment.find_by_id(c.reply_to_id).user.name%><%else%>Deleted User<%end%></b> wrote:"data-content="<%=PhenotypeComment.find_by_id(c.reply_to_id).comment_text%><%end%>"><% if c.reply_to_id != -1 and c.reply_to_id != nil%><%if PhenotypeComment.find_by_id(c.reply_to_id).user%>@<%=PhenotypeComment.find_by_id(c.reply_to_id).user.name%><%else%>@Deleted User<%end%><% end %></a>
|
||||
<%if c.user != nil%><%=image_tag c.user.avatar.url(:head),:style => "vertical-align:middle;margin: 10px;float:left"%><%end%> <%= simple_format(c.comment_text) %><br/><%=link_to "Reply to", "#", class: "reply_link"%>
|
||||
</div>
|
||||
<div id="<%="comment"+c.id.to_s%>">
|
||||
<div class="comments__single-comment clearfix">
|
||||
<div class="pull-left comments__comment-photo-div">
|
||||
<%if c.user != nil%>
|
||||
<%=image_tag c.user.avatar.url(:head), class: "comments__comment-photo"%>
|
||||
<%end%>
|
||||
</div>
|
||||
<div class="comments__comment-text-div clearfix">
|
||||
<p class="comments__comment-username"><%if c.user != nil %><%= link_to c.user.name, c.user%><%else%>Deleted User<%end%></p>
|
||||
<p class="comments__comment-subject"><%= c.subject %></p>
|
||||
<small class="comments__comment-date"><%= c.created_at %></small>
|
||||
<a href="#">
|
||||
<% if c.reply_to_id != -1 and c.reply_to_id != nil%>
|
||||
<%if PhenotypeComment.find_by_id(c.reply_to_id).user%>
|
||||
@<%=PhenotypeComment.find_by_id(c.reply_to_id).user.name%>
|
||||
<%else%>
|
||||
@Deleted User
|
||||
<%end%>
|
||||
<% end %>
|
||||
</a>
|
||||
<%= simple_format c.comment_text, class: "comments__comment-text" %>
|
||||
<%=link_to "Reply", "#", class: "btn btn-default comments__comment-reply-button"%>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
<% end %>
|
||||
|
||||
<script type="text/javascript">
|
||||
$(document).ready(function () {
|
||||
$("[rel=comment_tooltip]").popover({placement:'right'});
|
||||
});
|
||||
</script>
|
||||
<% end %>
|
||||
|
||||
Some files were not shown because too many files have changed in this diff Show More
Reference in New Issue
Block a user