mirror of
https://github.com/chenasraf/snpr.git
synced 2026-05-18 01:39:01 +00:00
First version of genotype-frequency pieplot works
This commit is contained in:
Philipp Bayer
2
Rakefile
2
Rakefile
@@ -1,7 +1,7 @@
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# Add your own tasks in files placed in lib/tasks ending in .rake,
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# for example lib/tasks/capistrano.rake, and they will automatically be available to Rake.
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require 'resque/tasks'
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#require 'resque/tasks'
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require File.expand_path('../config/application', __FILE__)
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require 'rake'
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@@ -1,27 +1,3 @@
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<script>
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$(document).ready(function(){
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var data = [
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['Heavy Industry', 12],['Retail', 9], ['Light Industry', 14],
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['Out of home', 16],['Commuting', 7], ['Orientation', 9]
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];
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var plot1 = jQuery.jqplot ('chart1', [data],
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{
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seriesDefaults: {
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// Make this a pie chart.
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renderer: jQuery.jqplot.PieRenderer,
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rendererOptions: {
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// Put data labels on the pie slices.
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// By default, labels show the percentage of the slice.
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showDataLabels: true
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}
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},
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legend: { show:true, location: 'e' }
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}
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);
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});
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</script>
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<div id="chart1" style="height:300px; width:500px;"></div>
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<div class="leftside">
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<h1>Welcome to <em>openSNP</em></h1>
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<p><%=image_tag "/images/microarray.png",:style => "float:left;margin: 10px"%></p>
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@@ -1,9 +1,5 @@
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<div class="row">
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<div class="span3 columns"><h2>SNP <%= @snp.name %></h2></div>
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<% if current_user %>
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<div class="span4"><%= link_to "Back to your homepage", current_user %></div>
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<% end %>
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<div class="span3"><%= link_to "Back to SNPs", :snps%></div>
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</div>
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<div class="row">
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<div class="span3 columns">
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@@ -47,34 +43,7 @@
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<div class="span3 columns">
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<center><h6><a href="#" rel="tooltip" title="How the different genetic variation at this position is distributed over all <em>openSNP</em> users.">Genotype Frequency</a></h6></center>
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<%if @total_genotypes != 0%>
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<table class="table table-striped">
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<thead>
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<tr>
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</tr>
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</thead>
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<tbody>
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<%@snp.genotype_frequency.each do |key,value|%>
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<%if current_user != nil and UserSnp.find_by_user_id_and_snp_name(current_user.id,@snp.name) != nil%>
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<%if key == @user_snp.local_genotype%>
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<tr>
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<td><b><%=key%></b></td>
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<td><b><%=(value.to_f/@total_genotypes).to_s[0,4]%></b></td>
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</tr>
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<%else%>
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<tr>
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<td><%=key%></td>
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<td><%=(value.to_f/@total_genotypes).to_s[0,4]%></td>
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</tr>
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<%end%>
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<%else%>
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<tr>
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<td><%=key%></td>
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<td><%=(value.to_f/@total_genotypes).to_s[0,4]%></td>
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</tr>
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<%end%>
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<%end%>
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</tbody>
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</table>
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<div id="freq_chart" style="height:200px; width:200px;"></div>
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<%else%>
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We don't have enough users yet.
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<%end%>
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@@ -288,6 +257,29 @@
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<script type="text/javascript">
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$(document).ready(function () {
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$("[rel=tooltip]").tooltip({placement:'left'});
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});
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</script>
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<%if @total_genotypes != 0%>
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<% counter = 0 %>
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var data=[
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<%@snp.genotype_frequency.each do |key,value|%>
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<% counter += 1 %>
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['<%=key%>',<%=(value.to_f/@total_genotypes).to_s[0,4]%>]<% if counter != @snp.genotype_frequency.length %>,<%end%>
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<%end%>
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];
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var plot1 = jQuery.jqplot ('freq_chart', [data],
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{
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seriesDefaults: {
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renderer: jQuery.jqplot.PieRenderer,
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rendererOptions: {
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showDataLabels: true
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}
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},
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legend: { show:true, location: 'e' }
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}
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);
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});
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<%end%>
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</script>
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259
public/stylesheets/jquery.jqplot.css
Normal file
259
public/stylesheets/jquery.jqplot.css
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@@ -0,0 +1,259 @@
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/*rules for the plot target div. These will be cascaded down to all plot elements according to css rules*/
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.jqplot-target {
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position: relative;
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color: #666666;
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font-family: "Trebuchet MS", Arial, Helvetica, sans-serif;
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font-size: 1em;
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/* height: 300px;
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width: 400px;*/
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}
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/*rules applied to all axes*/
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.jqplot-axis {
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font-size: 0.75em;
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}
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.jqplot-xaxis {
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margin-top: 10px;
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}
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.jqplot-x2axis {
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margin-bottom: 10px;
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}
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.jqplot-yaxis {
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margin-right: 10px;
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}
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.jqplot-y2axis, .jqplot-y3axis, .jqplot-y4axis, .jqplot-y5axis, .jqplot-y6axis, .jqplot-y7axis, .jqplot-y8axis, .jqplot-y9axis, .jqplot-yMidAxis {
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margin-left: 10px;
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margin-right: 10px;
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}
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/*rules applied to all axis tick divs*/
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.jqplot-axis-tick, .jqplot-xaxis-tick, .jqplot-yaxis-tick, .jqplot-x2axis-tick, .jqplot-y2axis-tick, .jqplot-y3axis-tick, .jqplot-y4axis-tick, .jqplot-y5axis-tick, .jqplot-y6axis-tick, .jqplot-y7axis-tick, .jqplot-y8axis-tick, .jqplot-y9axis-tick, .jqplot-yMidAxis-tick {
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position: absolute;
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white-space: pre;
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}
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.jqplot-xaxis-tick {
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top: 0px;
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/* initial position untill tick is drawn in proper place */
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left: 15px;
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/* padding-top: 10px;*/
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vertical-align: top;
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}
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.jqplot-x2axis-tick {
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bottom: 0px;
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/* initial position untill tick is drawn in proper place */
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left: 15px;
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/* padding-bottom: 10px;*/
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vertical-align: bottom;
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}
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.jqplot-yaxis-tick {
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right: 0px;
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/* initial position untill tick is drawn in proper place */
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top: 15px;
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/* padding-right: 10px;*/
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text-align: right;
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}
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.jqplot-yaxis-tick.jqplot-breakTick {
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right: -20px;
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margin-right: 0px;
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padding:1px 5px 1px 5px;
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/* background-color: white;*/
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z-index: 2;
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font-size: 1.5em;
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}
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.jqplot-y2axis-tick, .jqplot-y3axis-tick, .jqplot-y4axis-tick, .jqplot-y5axis-tick, .jqplot-y6axis-tick, .jqplot-y7axis-tick, .jqplot-y8axis-tick, .jqplot-y9axis-tick {
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left: 0px;
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/* initial position untill tick is drawn in proper place */
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top: 15px;
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/* padding-left: 10px;*/
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/* padding-right: 15px;*/
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text-align: left;
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}
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.jqplot-yMidAxis-tick {
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text-align: center;
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white-space: nowrap;
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}
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.jqplot-xaxis-label {
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margin-top: 10px;
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font-size: 11pt;
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position: absolute;
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}
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.jqplot-x2axis-label {
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margin-bottom: 10px;
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font-size: 11pt;
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position: absolute;
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}
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.jqplot-yaxis-label {
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margin-right: 10px;
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/* text-align: center;*/
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font-size: 11pt;
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position: absolute;
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}
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.jqplot-yMidAxis-label {
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font-size: 11pt;
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position: absolute;
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}
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.jqplot-y2axis-label, .jqplot-y3axis-label, .jqplot-y4axis-label, .jqplot-y5axis-label, .jqplot-y6axis-label, .jqplot-y7axis-label, .jqplot-y8axis-label, .jqplot-y9axis-label {
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/* text-align: center;*/
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font-size: 11pt;
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margin-left: 10px;
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position: absolute;
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}
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.jqplot-meterGauge-tick {
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font-size: 0.75em;
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color: #999999;
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}
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.jqplot-meterGauge-label {
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font-size: 1em;
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color: #999999;
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}
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table.jqplot-table-legend {
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margin-top: 12px;
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margin-bottom: 12px;
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margin-left: 12px;
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margin-right: 12px;
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}
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table.jqplot-table-legend, table.jqplot-cursor-legend {
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background-color: rgba(255,255,255,0.6);
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border: 1px solid #cccccc;
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position: absolute;
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font-size: 0.75em;
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}
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td.jqplot-table-legend {
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vertical-align:middle;
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}
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/*
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These rules could be used instead of assigning
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element styles and relying on js object properties.
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*/
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/*
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td.jqplot-table-legend-swatch {
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padding-top: 0.5em;
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text-align: center;
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}
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tr.jqplot-table-legend:first td.jqplot-table-legend-swatch {
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padding-top: 0px;
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}
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*/
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td.jqplot-seriesToggle:hover, td.jqplot-seriesToggle:active {
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cursor: pointer;
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}
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.jqplot-table-legend .jqplot-series-hidden {
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text-decoration: line-through;
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}
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div.jqplot-table-legend-swatch-outline {
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border: 1px solid #cccccc;
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padding:1px;
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}
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div.jqplot-table-legend-swatch {
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width:0px;
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height:0px;
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border-top-width: 5px;
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border-bottom-width: 5px;
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border-left-width: 6px;
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border-right-width: 6px;
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border-top-style: solid;
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border-bottom-style: solid;
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border-left-style: solid;
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border-right-style: solid;
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}
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.jqplot-title {
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top: 0px;
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left: 0px;
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padding-bottom: 0.5em;
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font-size: 1.2em;
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}
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table.jqplot-cursor-tooltip {
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border: 1px solid #cccccc;
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font-size: 0.75em;
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}
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.jqplot-cursor-tooltip {
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border: 1px solid #cccccc;
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font-size: 0.75em;
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white-space: nowrap;
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background: rgba(208,208,208,0.5);
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padding: 1px;
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}
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.jqplot-highlighter-tooltip, .jqplot-canvasOverlay-tooltip {
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border: 1px solid #cccccc;
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font-size: 0.75em;
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white-space: nowrap;
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background: rgba(208,208,208,0.5);
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padding: 1px;
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}
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.jqplot-point-label {
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font-size: 0.75em;
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z-index: 2;
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}
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td.jqplot-cursor-legend-swatch {
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vertical-align: middle;
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text-align: center;
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}
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div.jqplot-cursor-legend-swatch {
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width: 1.2em;
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height: 0.7em;
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}
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.jqplot-error {
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/* Styles added to the plot target container when there is an error go here.*/
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text-align: center;
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}
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.jqplot-error-message {
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/* Styling of the custom error message div goes here.*/
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position: relative;
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top: 46%;
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display: inline-block;
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}
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div.jqplot-bubble-label {
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font-size: 0.8em;
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/* background: rgba(90%, 90%, 90%, 0.15);*/
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padding-left: 2px;
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padding-right: 2px;
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color: rgb(20%, 20%, 20%);
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}
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div.jqplot-bubble-label.jqplot-bubble-label-highlight {
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background: rgba(90%, 90%, 90%, 0.7);
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}
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div.jqplot-noData-container {
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text-align: center;
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background-color: rgba(96%, 96%, 96%, 0.3);
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}
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