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40 Commits

Author SHA1 Message Date
Philipp Bayer
463801012e Updates Rubyzip 2018-09-10 18:21:47 +08:00
Helge Rausch
f2740aba52 Simplify env setup (#462) 
* Simplify environment setup

* Fix TravsCI config

* Fix typo
 2017-12-28 09:54:33 -08:00
SXibolet
49f80b1cf1 fix grammar in views for issue 239 2016-06-02 16:18:20 -04:00
Helge Rausch
8aec988fbf Move configuration into environment 2015-10-31 12:08:31 +01:00
Helge Rausch
b89fa8aa97 Revert "Make tests fail if test coverage drops" 
This reverts commit 3142abe96d.
 2015-10-10 12:52:06 +02:00
Helge Rausch
3142abe96d Make tests fail if test coverage drops 2015-09-26 12:52:50 +02:00
Bastian Greshake
0c75164db0 added local logfile to gitignore 2015-06-22 10:39:56 +02:00
Helge Rausch
280975e18e Get rid of most of the deprecation warnings 2015-03-15 19:05:51 +01:00
Helge Rausch
c713f40f59 Include Snp creation in genotype parsing 2014-08-30 15:12:06 +02:00
Helge Rausch
09b9631db4 Directly link to the generic dump URL 2014-06-05 08:58:27 +02:00
Helge Rausch
afc15ffa25 removing paths initializer 2013-09-08 09:41:47 +02:00
Helge Rausch
36f827f0a2 Merge branch 'asset_pipeline' into capify 
Conflicts:
	.gitignore
	Gemfile
	Gemfile.lock
	app/views/fitbit_profiles/show.html.erb
 2013-08-25 10:25:50 +02:00
Helge Rausch
5cf8facace setting up capistrano 2013-08-25 10:22:30 +02:00
Helge Rausch
1c90d39c27 unignoring deploy.rb 2013-08-18 13:59:18 +02:00
Helge Rausch
f44e4936af dropping snp_name column from user_snps 2013-06-30 14:44:53 +02:00
drsnuggles
00b8235a49 Removed deploy.rb because user-names on server are a bit confidential 2013-02-10 10:25:51 +10:00
Helge Rausch
032276ec81 make use of the asset pipeline 2013-02-08 18:32:39 +01:00
drsnuggles
58908729bf New Relic gem added 2013-01-29 12:13:02 +10:00
Helge Rausch
d74a1907f0 re-adding test coverage 
See `./coverage/index.html` after running tests.
 2012-12-30 14:27:49 +01:00
Helge Rausch
d5daa39b9a refactored the Mendeley job 
General stuff:
* I removed config/app_config.yml from the repo and added
  config/app_config.yml.example without actual keys.
* I added config/app_config.yml to .gitignore

Mendley
* I added the mendeley gem, which I had to extend to allow paging
  through the search results. Now we get ALL THE PAPERS, and not just
  the first 20.
* The Mendeley job has been renamed to MendeleySearch due to naming
  conflicts with the mendeley gem.
* The consumer key is now read from the app_config.yml
 2012-12-04 19:10:27 +01:00
Philipp Bayer
86c950941d Replaced secret_token by new one - devs should check their mail 2012-05-30 09:44:26 +10:00
Helge Rausch
e80ce606e6 helping Zipgenotypingfiles find its UserPhenotypes 2012-03-30 18:23:13 +02:00
Helge Rausch
e2ae85c9f8 using bootstrap-modal for user phenotypes 2012-03-21 17:06:55 +01:00
Helge Rausch
481bccc4de adding rcov 2011-12-20 18:00:39 +01:00
Helge Rausch
7100994202 adding travis config 2011-10-21 08:30:43 +02:00
Bastian Greshake
1065235a31 new: requesting genotyping-files of given variation at given phenotype. get zipped and user gets email with download link. fixed: 1.help-boxes now appear again 2.sending mail for passwordrecovery and after registration now work 2011-09-20 19:12:56 +02:00
Bastian Greshake
956ac9ef99 drop-down-header and deleting avatars now works, now sporting gregor mendel as standard-avatar 2011-09-15 14:56:31 +02:00
Helge Rausch
808d0df29e adding test for Parsing job 2011-09-10 09:40:20 +02:00
Helge Rausch
a26d7720ce ignoring database.yml, adding database.yml.example 2011-09-09 08:43:44 +02:00
Philipp
0d4c1a3185 Kicked out sunspot-log 2011-09-07 22:01:38 +10:00
Philipp
1f8558b740 Added Solr, Sunspot. Aded some indexes to models. Changed README to rdoc-format. 2011-09-04 17:44:29 +10:00
Philipp
274d65bd92 Now possible to delete messages from message-show 2011-08-23 17:43:53 +10:00
Bastian Greshake
afd300a3c9 enhanced gitignore... 2011-08-21 12:54:53 +02:00
Bastian Greshake
db330e861c key-stuff 2011-08-21 10:47:07 +02:00
Bastian Greshake
51b51a6aec added a small code-snippet to demonstrate how plos-api can be used 2011-08-19 18:42:06 +02:00
Bastian Greshake
84908c35d0 added snp-model, no file-parsing yet 2011-06-16 20:01:50 +02:00
Bastian Greshake
abf37a2e73 Merge branch 'master' of github.com:gedankenstuecke/snpr 
Conflicts:
	.gitignore
 2011-06-16 15:39:53 +02:00
Bastian Greshake
65e082294f edited .gitignore 2011-06-16 15:37:23 +02:00
Philipp
89700fa869 changed gitignore, got too annoying 2011-06-16 22:31:20 +10:00
Bastian Greshake
7c5eda097a tried adding a file-upload 2011-06-15 19:18:15 +02:00